def test_basic_network_where_neighbor_of_citations_merges_enabled(self):
net = NiceCXNetwork()
adjud = RedundantEdgeAdjudicator()
edge_map = {}
nid = net.create_edge(edge_source=0,
edge_target=1,
edge_interaction='neighbor-of')
net.set_edge_attribute(nid,
RedundantEdgeAdjudicator.CITATION, ['pubmed:5'],
type='list_of_string')
cid = net.create_edge(edge_source=0,
edge_target=1,
edge_interaction='controls-state-change-of')
net.set_edge_attribute(cid,
RedundantEdgeAdjudicator.CITATION, ['pubmed:6'],
type='list_of_string')
neighbor_of_map = {}
controls_state_change_map = {}
other_edge_exists = {}
for k, v in net.get_edges():
s = v['s']
t = v['t']
i = v['i']
if i == 'neighbor-of':
if not s in neighbor_of_map:
neighbor_of_map[s] = {}
if not t in neighbor_of_map:
neighbor_of_map[t] = {}
neighbor_of_map[s][t] = k
neighbor_of_map[t][s] = k
elif i == 'controls-state-change-of':
adjud._add_to_edge_map(controls_state_change_map, k, s, t)
else:
adjud._add_to_edge_map(other_edge_exists, k, s, t)
adjud.remove_and_merge_neighbor_of(net, neighbor_of_map, edge_map)
net.print_summary()
cx_network.add_node_attribute(property_of=cx_node,
name="HEIGHT",
values=height)
# TODO: need to handle defaults. The following doesn't appear to work.
# node_properties = [
# {"properties_of": "nodes:default", "properties": {"NODE_SHAPE": "RECTANGLE"}}
# ]
# set_visual_properties_aspect(cx_network, node_properties)
style_network = ndex2.create_nice_cx_from_file("./WP4571.cx.json")
cx_network.apply_style_from_network(style_network)
set_cartesian_layout_aspect(cx_network, cartesianLayout)
cx_network.print_summary()
mycx = cx_network.to_cx()
# print(mycx)
pprint.pprint(mycx, depth=4)
# result = cx_network.upload_to(
# server="http://test.ndexbio.org", username=NDEX_USER, password=NDEX_PWD
# )
result = cx_network.update_to(
server="http://test.ndexbio.org",
username=NDEX_USER,
password=NDEX_PWD,
uuid="99698d91-9155-11e9-b7e4-0660b7976219",
)
