def test_half_supported(self):
objects = [Block, Segment, IrregularlySampledSignal, SpikeTrain, Epoch]
res = generate_one_simple_block(supported_objects=objects)
self.assertTrue(isinstance(res, Block))
assert_neo_object_is_compliant(res)
self.assertEqual(len(res.segments), 3)
seg1, seg2, seg3 = res.segments
self.assertEqual(len(seg1.analogsignals), 0)
self.assertEqual(len(seg1.irregularlysampledsignals), 0)
self.assertEqual(len(seg1.spiketrains), 6)
self.assertEqual(len(seg1.events), 0)
self.assertEqual(len(seg1.epochs), 2)
self.assertEqual(len(seg2.analogsignals), 0)
self.assertEqual(len(seg2.irregularlysampledsignals), 0)
self.assertEqual(len(seg2.spiketrains), 6)
self.assertEqual(len(seg2.events), 0)
self.assertEqual(len(seg2.epochs), 2)
self.assertEqual(len(seg3.analogsignals), 0)
self.assertEqual(len(seg3.irregularlysampledsignals), 0)
self.assertEqual(len(seg3.spiketrains), 6)
self.assertEqual(len(seg3.events), 0)
self.assertEqual(len(seg3.epochs), 2)
def test_defaults(self):
res = generate_one_simple_block()
self.assertTrue(isinstance(res, Block))
assert_neo_object_is_compliant(res)
self.assertEqual(len(res.segments), 0)
def test_all_supported(self):
objects = [Block, Segment, ChannelIndex, Unit, AnalogSignal, IrregularlySampledSignal,
SpikeTrain, Event, Epoch]
res = generate_one_simple_block(supported_objects=objects)
self.assertTrue(isinstance(res, Block))
assert_neo_object_is_compliant(res)
self.assertEqual(len(res.segments), 3)
seg1, seg2, seg3 = res.segments
self.assertEqual(len(seg1.analogsignals), 4)
self.assertEqual(len(seg1.irregularlysampledsignals), 0)
self.assertEqual(len(seg1.spiketrains), 6)
self.assertEqual(len(seg1.events), 3)
self.assertEqual(len(seg1.epochs), 2)
self.assertEqual(len(seg2.analogsignals), 4)
self.assertEqual(len(seg2.irregularlysampledsignals), 0)
self.assertEqual(len(seg2.spiketrains), 6)
self.assertEqual(len(seg2.events), 3)
self.assertEqual(len(seg2.epochs), 2)
self.assertEqual(len(seg3.analogsignals), 4)
self.assertEqual(len(seg3.irregularlysampledsignals), 0)
self.assertEqual(len(seg3.spiketrains), 6)
self.assertEqual(len(seg3.events), 3)
self.assertEqual(len(seg3.epochs), 2)
def test_defaults(self):
res = generate_one_simple_block()
self.assertTrue(isinstance(res, Block))
assert_neo_object_is_compliant(res)
self.assertEqual(len(res.segments), 0)
def test_all_without_segment(self):
objects = [Block, ChannelIndex, Unit, AnalogSignal, IrregularlySampledSignal, SpikeTrain,
Event, Epoch]
res = generate_one_simple_block(supported_objects=objects)
self.assertTrue(isinstance(res, Block))
assert_neo_object_is_compliant(res)
self.assertEqual(len(res.segments), 0)
def test_all_without_segment(self):
objects = [Block, ChannelIndex, Unit, AnalogSignal, IrregularlySampledSignal, SpikeTrain,
Event, Epoch]
res = generate_one_simple_block(supported_objects=objects)
self.assertTrue(isinstance(res, Block))
assert_neo_object_is_compliant(res)
self.assertEqual(len(res.segments), 0)
def build_fake_block():
objects = [
Block, Segment, RecordingChannelGroup, Event, Epoch, Unit,
AnalogSignal, SpikeTrain
]
b = generate_one_simple_block(supported_objects=objects)
b.name = 'foo'
b.description = 'this is a test block'
b.file_origin = '/tmp/nonexist.ing'
b.annotations = {
'string': 'hello, world!',
'int': 42,
'float': 42.0,
'bool': True
}
# FIXME remove this when Neo is fixed (RCG - Unit branch)
irr1 = IrregularlySampledSignal([5, 6, 7], [2, 3, 4], 'mV', 'ms')
irr2 = IrregularlySampledSignal([7, 8, 9], [1, 5, 9], 'mV', 'ms')
irr3 = IrregularlySampledSignal([0, 1, 2], [2, 5, 1], 'mV', 'ms')
b.segments[0].irregularlysampledsignals.append(irr1)
b.segments[0].irregularlysampledsignals.append(irr2)
b.segments[1].irregularlysampledsignals.append(irr3)
inds = [x for x in range(10)]
names = ['foo' + str(x) for x in inds]
unit1 = Unit('unit1')
unit2 = Unit('unit2')
unit3 = Unit('unit3')
for st in b.segments[0].spiketrains:
unit1.spiketrains.append(st)
for st in b.segments[1].spiketrains:
unit2.spiketrains.append(st)
rcg1 = RecordingChannelGroup(name='rcg1',
channel_indexes=inds,
channel_names=names)
rcg2 = RecordingChannelGroup(name='rcg2',
channel_indexes=inds,
channel_names=names)
rcg1.units.append(unit1)
rcg1.units.append(unit2)
rcg2.units.append(unit3)
for sig in b.segments[0].analogsignals:
rcg1.analogsignals.append(sig)
for sig in b.segments[1].analogsignals:
rcg2.analogsignals.append(sig)
for sig in b.segments[0].irregularlysampledsignals:
rcg1.irregularlysampledsignals.append(sig)
for sig in b.segments[1].irregularlysampledsignals:
rcg2.irregularlysampledsignals.append(sig)
b.recordingchannelgroups = [rcg1, rcg2]
return b
