def compute_hotspot():
print request.content_type
bodyArray = []
dvidServer = ns.getDefaultDvidServer()
uuid = ns.getDefaultUuid()
if request.content_type == 'application/x-www-form-urlencoded':
bodyIdStr = request.forms.get('bodyId')
bodyArray = [int(bodyId) for bodyId in bodyIdStr.split()]
elif request.content_type == 'application/json':
print request.json
jsonObj = request.json
try:
jsonschema.validate(jsonObj,
json.loads(ns.getSchema('hotspot', 'post')))
except jsonschema.exceptions.ValidationError as inst:
print 'Invalid json input'
print inst
return '<p>Hotspot computation for ' + str(
bodyArray) + ' failed.</p>'
uuid = jsonObj['uuid']
if jsonObj.has_key('dvid-server'):
dvidServer = jsonObj['dvid-server']
bodyArray = jsonObj['bodies']
output = {}
config = {'dvid-server': dvidServer, 'uuid': uuid}
print '********'
print config
global qualityAnalyzer
for bodyId in bodyArray:
# bodyLink = '/api/node/' + uuid + '/skeletons/' + str(bodyId) + '.swc'
# print '************', bodyLink
result = None
try:
result = qualityAnalyzer.computeHotSpot(bodyId)
except Exception as e:
result = {"error": str(e)}
return result
def compute_hotspot():
print request.content_type
bodyArray = [];
dvidServer = ns.getDefaultDvidServer()
uuid = ns.getDefaultUuid()
if request.content_type == 'application/x-www-form-urlencoded':
bodyIdStr = request.forms.get('bodyId')
bodyArray = [int(bodyId) for bodyId in bodyIdStr.split()]
elif request.content_type == 'application/json':
print request.json
jsonObj = request.json
try:
jsonschema.validate(jsonObj, json.loads(ns.getSchema('hotspot', 'post')))
except jsonschema.exceptions.ValidationError as inst:
print 'Invalid json input'
print inst
return '<p>Hotspot computation for ' + str(bodyArray) + ' failed.</p>'
uuid = jsonObj['uuid']
if jsonObj.has_key('dvid-server'):
dvidServer = jsonObj['dvid-server']
bodyArray = jsonObj['bodies']
output = {}
config = {'dvid-server': dvidServer, 'uuid': uuid}
print '********'
print config
global qualityAnalyzer
for bodyId in bodyArray:
# bodyLink = '/api/node/' + uuid + '/skeletons/' + str(bodyId) + '.swc'
# print '************', bodyLink
result = None
try:
result = qualityAnalyzer.computeHotSpot(bodyId)
except Exception as e:
result = {"error": str(e)}
return result
def do_skeletonize():
print request.content_type
bodyArray = []
dvidServer = ns.getDefaultDvidServer()
uuid = ns.getDefaultUuid()
if request.content_type == 'application/x-www-form-urlencoded':
bodyIdStr = request.forms.get('bodyId')
bodyArray = [int(bodyId) for bodyId in bodyIdStr.split()]
elif request.content_type == 'application/json':
print request.json
jsonObj = request.json
try:
jsonschema.validate(
jsonObj, json.loads(ns.getSchema('skeletonize', 'post')))
except jsonschema.exceptions.ValidationError as inst:
print 'Invalid json input'
print inst
return '<p>Skeletonization for ' + str(bodyArray) + ' failed.</p>'
uuid = jsonObj['uuid']
if jsonObj.has_key('dvid-server'):
dvidServer = jsonObj['dvid-server']
bodyArray = jsonObj['bodies']
output = {}
config = {'dvid-server': dvidServer, 'uuid': uuid}
print '********'
print config
output["swc-list"] = []
output['error'] = []
print dvidServer
conn = httplib.HTTPConnection(dvidServer)
conn.request("GET", '/api/node/' + uuid + '/skeletons/info')
r1 = conn.getresponse()
if not r1.status == 200:
output['error'].append('Cannot connect to the DVID server.')
else:
for bodyId in bodyArray:
bodyLink = '/api/node/' + uuid + '/skeletons/' + str(
bodyId) + '.swc'
print '************', bodyLink
conn = httplib.HTTPConnection(dvidServer)
conn.request("GET", bodyLink)
r1 = conn.getresponse()
swcAvailable = False
if not r1.status == 200:
try:
skl.Skeletonize(bodyId, 'dvid', config)
print 'skeletons retrieved.'
except Exception as inst:
print str(inst)
output['error'].append(str(inst))
else:
swcAvailable = True
else:
swcAvailable = True
if swcAvailable:
swc = {"id": bodyId, "url": dvidServer + bodyLink}
output["swc-list"].append(swc)
return json.dumps(output, sort_keys=False)
def do_skeletonize():
print request.content_type
bodyArray = [];
dvidServer = ns.getDefaultDvidServer()
uuid = ns.getDefaultUuid()
if request.content_type == 'application/x-www-form-urlencoded':
bodyIdStr = request.forms.get('bodyId')
bodyArray = [int(bodyId) for bodyId in bodyIdStr.split()]
elif request.content_type == 'application/json':
print request.json
jsonObj = request.json
try:
jsonschema.validate(jsonObj, json.loads(ns.getSchema('skeletonize', 'post')))
except jsonschema.exceptions.ValidationError as inst:
print 'Invalid json input'
print inst
return '<p>Skeletonization for ' + str(bodyArray) + ' failed.</p>'
uuid = jsonObj['uuid']
if jsonObj.has_key('dvid-server'):
dvidServer = jsonObj['dvid-server']
bodyArray = jsonObj['bodies']
output = {}
config = {'dvid-server': dvidServer, 'uuid': uuid}
print '********'
print config
output["swc-list"] = []
output['error'] = []
print dvidServer
conn = httplib.HTTPConnection(dvidServer)
conn.request("GET", '/api/node/' + uuid + '/skeletons/info')
r1 = conn.getresponse()
if not r1.status == 200:
output['error'].append('Cannot connect to the DVID server.')
else:
for bodyId in bodyArray:
bodyLink = '/api/node/' + uuid + '/skeletons/' + str(bodyId) + '.swc'
print '************', bodyLink
conn = httplib.HTTPConnection(dvidServer)
conn.request("GET", bodyLink)
r1 = conn.getresponse()
swcAvailable = False
if not r1.status == 200:
try:
skl.Skeletonize(bodyId, 'dvid', config)
print 'skeletons retrieved.'
except Exception as inst:
print str(inst)
output['error'].append(str(inst))
else:
swcAvailable = True
else:
swcAvailable = True
if swcAvailable:
swc = {"id": bodyId, "url": dvidServer + bodyLink}
output["swc-list"].append(swc)
return json.dumps(output, sort_keys = False)