def html_view(self):
""" see :mod:`ni.tools.html_view` """
view = View()
model_prefix = self.name + "/"
for key in self.configuration.__dict__:
view.add(model_prefix + "#3/tabs/Configuration/table/"+key,self.configuration.__dict__[key])
return view
def html_view(self):
""" see :mod:`ni.tools.html_view` """
view = View()
model_prefix = self.name + "/"
for key in self.configuration.__dict__:
view.add(model_prefix + "#3/tabs/Configuration/table/"+key,self.configuration.__dict__[key])
return view
def html_view(self): view = View() data_prefix = "" for c in range(self.nr_conditions): cond_data = self.condition(c) with view.figure(data_prefix + "/tabs/Condition " + str(c) + "/Firing Rate/Plot/#4/Mean/tabs/Axis 0"): pl.plot(np.mean(np.array(cond_data.firing_rate()).transpose(),axis=0)) with view.figure(data_prefix + "/tabs/Condition " + str(c) + "/Firing Rate/Plot/#4/Mean/tabs/Axis 1"): pl.plot(np.mean(np.array(cond_data.firing_rate()).transpose(),axis=1)) with view.figure(data_prefix + "/tabs/Condition " + str(c) + "/Firing Rate/Plot/#4/Mean/tabs/Axis 1 (smoothed)"): pl.plot(gaussian_filter(np.mean(np.array(cond_data.firing_rate()).transpose(),axis=1),20)) for cell in range(cond_data.nr_cells): cell_data = cond_data.cell(cell) with view.figure(data_prefix + "/tabs/Condition " + str(c) + "/Spikes/tabs/Cell " + str(cell) + "/Plot"): pl.imshow(1-cell_data.data,interpolation='nearest',aspect=20,cmap='gray') return view
def html_view(self): view = View() data_prefix = "" for c in range(self.nr_conditions): cond_data = self.condition(c) with view.figure(data_prefix + "/tabs/Condition " + str(c) + "/Firing Rate/Plot/#4/Mean/tabs/Axis 0"): pl.plot(np.mean(np.array(cond_data.firing_rate()).transpose(),axis=0)) with view.figure(data_prefix + "/tabs/Condition " + str(c) + "/Firing Rate/Plot/#4/Mean/tabs/Axis 1"): pl.plot(np.mean(np.array(cond_data.firing_rate()).transpose(),axis=1)) with view.figure(data_prefix + "/tabs/Condition " + str(c) + "/Firing Rate/Plot/#4/Mean/tabs/Axis 1 (smoothed)"): pl.plot(gaussian_filter(np.mean(np.array(cond_data.firing_rate()).transpose(),axis=1),20)) for cell in range(cond_data.nr_cells): cell_data = cond_data.cell(cell) with view.figure(data_prefix + "/tabs/Condition " + str(c) + "/Spikes/tabs/Cell " + str(cell) + "/Plot"): pl.imshow(1-cell_data.data,interpolation='nearest',aspect=20,cmap='gray') return view
def html_view(self):
"""
Generates an html_view of this object.
Example::
stats.html_view().render('stats_file.html')
"""
view = View()
stat_prefix = ""
for k in self.keys():
view.add(
stat_prefix + "#2/tabs/Models/" + k.replace("/", "/tabs/"), k)
node = self.getNode(k)
for prop in node:
if type(node[prop]) == np.float64:
view.add(
stat_prefix + "#2/tabs/Models/" +
k.replace("/", "/tabs/") + "/#1/" + prop,
prop + " = " + str(node[prop]))
if type(node[prop]) == list:
with view.figure(stat_prefix + "#2/tabs/Models/" +
k.replace("/", "/tabs/") +
"/Plots/tabs/" + prop):
pl.plot(node[prop])
for d in self.getDimensions():
x = self.get(d)
if type(x[0]) == np.string_:
view.add(stat_prefix + "#2/tabs/Dimensions/tabs/" + d + "/",
str(x))
elif len(x.shape) == 1:
try:
with view.figure("#2/tabs/Dimensions/tabs/" + d + "/#1"):
pl.plot(x)
except:
view.add(
stat_prefix + "#2/tabs/Dimensions/tabs/" + d +
"/#1/failed", x)
elif len(x.shape) == 2:
try:
with view.figure(stat_prefix + "#2/tabs/Dimensions/tabs/" +
d + "/#1"):
pl.plot(x)
with view.figure(stat_prefix + "#2/tabs/Dimensions/tabs/" +
d + "/#2"):
pl.plot(x.transpose())
except:
with view.figure(stat_prefix + "#2/tabs/Dimensions/tabs/" +
d + "/#1/failed"):
for xx in x:
for xxx in xx:
pl.plot(xxx)
elif len(x.shape) == 3:
try:
with view.figure(stat_prefix + "#2/tabs/Dimensions/tabs/" +
d + "/tabs/Axis 0/#1"):
pl.plot(np.mean(x, axis=0))
with view.figure(stat_prefix + "#2/tabs/Dimensions/tabs/" +
d + "/tabs/Axis 0/#2"):
pl.plot(np.mean(x, axis=0).transpose())
with view.figure(stat_prefix + "#2/tabs/Dimensions/tabs/" +
d + "/tabs/Axis 1/#1"):
pl.plot(np.mean(x, axis=1))
with view.figure(stat_prefix + "#2/tabs/Dimensions/tabs/" +
d + "/tabs/Axis 1/#2"):
pl.plot(np.mean(x, axis=1).transpose())
with view.figure(stat_prefix + "#2/tabs/Dimensions/tabs/" +
d + "/tabs/Axis 2/#1"):
pl.plot(np.mean(x, axis=2))
with view.figure(stat_prefix + "#2/tabs/Dimensions/tabs/" +
d + "/tabs/Axis 2/#2"):
pl.plot(np.mean(x, axis=2).transpose())
except:
view.add(
stat_prefix + "#2/tabs/Dimensions/tabs/" + d +
"/#1/failed", x)
return view
def html_view(self):
view = View()
view.title = self.project.name + " / " + self.path.split("/")[-2] + " ni. toolbox session"
#view.add("#0/Project",self.project)
for job in self.job_status.keys():
if "pending" in self.job_status[job]:
view.add("#1/Job Status/"+str(job)+"/table/pending", str(self.job_status[job]["pending"]))
if "starting..." in self.job_status[job]:
view.add("#1/Job Status/"+str(job)+"/table/starting", str(self.job_status[job]["starting..."]))
if "done." in self.job_status[job]:
view.add("#1/Job Status/"+str(job)+"/table/done", str(self.job_status[job]["done."]))
if "running..." in self.job_status[job]:
view.add("#1/Job Status/"+str(job)+"/table/running", str(self.job_status[job]["running..."]))
if "failed." in self.job_status[job]:
view.add("#1/Job Status/"+str(job)+"/table/failed", str(self.job_status[job]["failed."]))
jobs = copy(self.jobs)
for j in jobs.keys():
view.add("#2/Jobs/tabs/"+str(jobs[j].job_name)+"/tabs/"+str(j),jobs[j])
if jobs[j].status == "starting...":
view.add("#2/Jobs/tabs/"+str(jobs[j].job_name)+"/tabs/"+str(j)+"/.style","background-color: lightyellow; color: yellow;")
if jobs[j].status == "running...":
view.add("#2/Jobs/tabs/"+str(jobs[j].job_name)+"/tabs/"+str(j)+"/.style","background-color: lightyellow; color: black;")
if jobs[j].status == "failed.":
view.add("#2/Jobs/tabs/"+str(jobs[j].job_name)+"/tabs/"+str(j)+"/.style","color: darkred;")
if jobs[j].status == "done.":
view.add("#2/Jobs/tabs/"+str(jobs[j].job_name)+"/tabs/"+str(j)+"/.style","color: darkgreen;")
return view
def html_view(self):
view = View()
view.title = self.project.name + " / " + self.session.path.split("/")[-2] + "/" + str(self.job_name) + " " + str(self.job_number) + " ni. toolbox job"
for k in self.__dict__.keys():
if k != "session" and k != "project":
v = self.__dict__[k]
view.add("/Info/table/"+str(k),v)
if os.path.exists(self.path+"_results.html"):
view.add("/Results","<a href=\""+"job_"+str(self.job_number)+"_"+"_results.html"+"\">results</a>")
if os.path.exists(self.path+"results.html"):
view.add("/Results","<a href=\""+"job_"+str(self.job_number)+"_"+"results.html"+"\">results</a>")
if os.path.exists(self.path+"_log.txt"):
view.add("/Log","<a href=\""+"job_"+str(self.job_number)+"_"+"_log.txt"+"\">log</a>")
if os.path.exists(self.path+"_error.txt"):
view.add("/Error","<a href=\""+"job_"+str(self.job_number)+"_"+"_error.txt"+"\">Error log</a>")
if os.path.exists(self.path+"error.txt"):
view.add("/Error","<a href=\""+"job_"+str(self.job_number)+"_error.txt"+"\">Error log</a>")
return view
def html_view(self):
""" see :mod:`ni.tools.html_view` """
view = View()
model_prefix = self.model.name + "/"
view.add(model_prefix + "#2/beta",self.beta)
for key in self.configuration.__dict__:
view.add(model_prefix + "#3/tabs/Configuration/table/"+key,self.configuration.__dict__[key])
view.add(model_prefix + "#3/tabs/Design","")
prot_nr = 0
prototypes = self.plot_prototypes()
for p in prototypes:
prot_nr = prot_nr + 1
view.savefig(model_prefix + "#3/tabs/Prototypes/tabs/"+str(p), fig = prototypes[p])
prototypes = self.prototypes()
if 'autohistory2d' in prototypes and 'autohistory' in prototypes:
with view.figure(model_prefix + "#3/tabs/Prototypes/tabs/autohistory_2d+autohistory"):
for i in range(prototypes["autohistory2d"].shape[2]):
pl.plot(sum(prototypes["autohistory2d"],0)[i,:]+prototypes["autohistory"],'g:')
pl.plot(prototypes["autohistory"],'b-')
for c in self.design.components:
if type(c) != str:
with view.figure(model_prefix + "#3/tabs/Design/#2/tabs/"+c.header+"/#2/Splines"):
splines = c.getSplines()
if len(splines.shape) == 1:
pl.plot(splines,'-o')
elif len(splines.shape) == 2:
if splines.shape[0] == 1 or splines.shape[1] == 1:
pl.plot(splines,'-o')
else:
pl.plot(splines)
elif len(splines.shape) == 3:
for i in range(splines.shape[0]):
pl.subplot(np.ceil(np.sqrt(splines.shape[0])),np.ceil(np.sqrt(splines.shape[0])),i+1)
pl.imshow(splines[i,:,:],interpolation='nearest')
else:
view.add(model_prefix + "#3/tabs/Design/#2/tabs/##/component",str(c))
return view
def html_view(self):
""" see :mod:`ni.tools.html_view` """
view = View()
model_prefix = self.model.name + "/"
view.add(model_prefix + "#2/beta",self.beta)
for key in self.configuration.__dict__:
view.add(model_prefix + "#3/tabs/Configuration/table/"+key,self.configuration.__dict__[key])
view.add(model_prefix + "#3/tabs/Design","")
prot_nr = 0
prototypes = self.plot_prototypes()
for p in prototypes:
prot_nr = prot_nr + 1
view.savefig(model_prefix + "#3/tabs/Prototypes/tabs/"+str(p), fig = prototypes[p])
prototypes = self.prototypes()
if 'autohistory2d' in prototypes and 'autohistory' in prototypes:
with view.figure(model_prefix + "#3/tabs/Prototypes/tabs/autohistory_2d+autohistory"):
for i in range(prototypes["autohistory2d"].shape[2]):
pl.plot(sum(prototypes["autohistory2d"],0)[i,:]+prototypes["autohistory"],'g:')
pl.plot(prototypes["autohistory"],'b-')
for c in self.design.components:
if type(c) != str:
with view.figure(model_prefix + "#3/tabs/Design/#2/tabs/"+c.header+"/#2/Splines"):
splines = c.getSplines()
if len(splines.shape) == 1:
pl.plot(splines,'-o')
elif len(splines.shape) == 2:
if splines.shape[0] == 1 or splines.shape[1] == 1:
pl.plot(splines,'-o')
else:
pl.plot(splines)
elif len(splines.shape) == 3:
for i in range(splines.shape[0]):
pl.subplot(np.ceil(np.sqrt(splines.shape[0])),np.ceil(np.sqrt(splines.shape[0])),i+1)
pl.imshow(splines[i,:,:],interpolation='nearest')
else:
view.add(model_prefix + "#3/tabs/Design/#2/tabs/##/component",str(c))
return view
def html_view(self):
"""
Generates an html_view of this object.
Example::
stats.html_view().render('stats_file.html')
"""
view = View()
stat_prefix = ""
for k in self.keys():
view.add(stat_prefix + "#2/tabs/Models/"+k.replace("/","/tabs/"),k)
node = self.getNode(k)
for prop in node:
if type(node[prop]) == np.float64:
view.add(stat_prefix + "#2/tabs/Models/"+k.replace("/","/tabs/")+"/#1/"+prop,prop+" = "+str(node[prop]))
if type(node[prop]) == list:
with view.figure(stat_prefix + "#2/tabs/Models/"+k.replace("/","/tabs/")+"/Plots/tabs/"+prop):
pl.plot(node[prop])
for d in self.getDimensions():
x = self.get(d)
if type(x[0]) == np.string_:
view.add(stat_prefix + "#2/tabs/Dimensions/tabs/"+d+"/",str(x))
elif len(x.shape) == 1:
try:
with view.figure("#2/tabs/Dimensions/tabs/"+d+"/#1"):
pl.plot(x)
except:
view.add(stat_prefix + "#2/tabs/Dimensions/tabs/"+d+"/#1/failed",x)
elif len(x.shape) == 2:
try:
with view.figure(stat_prefix + "#2/tabs/Dimensions/tabs/"+d+"/#1"):
pl.plot(x)
with view.figure(stat_prefix + "#2/tabs/Dimensions/tabs/"+d+"/#2"):
pl.plot(x.transpose())
except:
with view.figure(stat_prefix + "#2/tabs/Dimensions/tabs/"+d+"/#1/failed"):
for xx in x:
for xxx in xx:
pl.plot(xxx)
elif len(x.shape) == 3:
try:
with view.figure(stat_prefix +"#2/tabs/Dimensions/tabs/"+d+"/tabs/Axis 0/#1"):
pl.plot(np.mean(x,axis=0))
with view.figure(stat_prefix + "#2/tabs/Dimensions/tabs/"+d+"/tabs/Axis 0/#2"):
pl.plot(np.mean(x,axis=0).transpose())
with view.figure(stat_prefix + "#2/tabs/Dimensions/tabs/"+d+"/tabs/Axis 1/#1"):
pl.plot(np.mean(x,axis=1))
with view.figure(stat_prefix + "#2/tabs/Dimensions/tabs/"+d+"/tabs/Axis 1/#2"):
pl.plot(np.mean(x,axis=1).transpose())
with view.figure(stat_prefix + "#2/tabs/Dimensions/tabs/"+d+"/tabs/Axis 2/#1"):
pl.plot(np.mean(x,axis=2))
with view.figure(stat_prefix + "#2/tabs/Dimensions/tabs/"+d+"/tabs/Axis 2/#2"):
pl.plot(np.mean(x,axis=2).transpose())
except:
view.add(stat_prefix + "#2/tabs/Dimensions/tabs/"+d+"/#1/failed",x)
return view
