Python transcript_splice_junctions Beispiele

Beispiel #1

Datei: test_gff.py Projekt: abuchanan/odetta

def test_transcript_splice_junctions():
    f = dummy('g.gff')
    features = Feature.from_file(f.name)
    juncs = transcript_splice_junctions(features)
    eq_({
        'Chr1_40.1': [220, 302],
        'Chr1_364.1': [83],
        'Chr1_366.1': [90, 196, 326, 535],
    }, juncs)

Beispiel #2

def test_transcript_splice_junctions():
    f = dummy('g.gff')
    features = Feature.from_file(f.name)
    juncs = transcript_splice_junctions(features)
    eq_(
        {
            'Chr1_40.1': [220, 302],
            'Chr1_364.1': [83],
            'Chr1_366.1': [90, 196, 326, 535],
        }, juncs)

Beispiel #3

Datei: reference_counts_base.py Projekt: abuchanan/odetta

 def mapper_init(self):
     """TODO"""
     features = Feature.from_file(self.options.reference)
     self.junctions = transcript_splice_junctions(features)

Beispiel #4

 def mapper_init(self):
     """TODO"""
     features = Feature.from_file(self.options.reference)
     self.junctions = transcript_splice_junctions(features)