def test_transcript_splice_junctions():
f = dummy('g.gff')
features = Feature.from_file(f.name)
juncs = transcript_splice_junctions(features)
eq_({
'Chr1_40.1': [220, 302],
'Chr1_364.1': [83],
'Chr1_366.1': [90, 196, 326, 535],
}, juncs)
def test_transcript_splice_junctions():
f = dummy('g.gff')
features = Feature.from_file(f.name)
juncs = transcript_splice_junctions(features)
eq_(
{
'Chr1_40.1': [220, 302],
'Chr1_364.1': [83],
'Chr1_366.1': [90, 196, 326, 535],
}, juncs)
def mapper_init(self):
"""TODO"""
features = Feature.from_file(self.options.reference)
self.junctions = transcript_splice_junctions(features)
def mapper_init(self):
"""TODO"""
features = Feature.from_file(self.options.reference)
self.junctions = transcript_splice_junctions(features)
