def test_12_provider_resolve_fail_doi(self): old_get = util.http_get util.http_get = get_doi_fail pmid = PMIDPlugin() record = {"identifier" : {"id" : "23175652", "type" : "pmid", "canonical" : "pmid:23175652"}} record = models.MessageObject(record=record) with self.assertRaises(plugin.PluginException): pmid.detect_provider(record) util.http_get = old_get
def test_10_provider_resolve_from_icon(self): old_get = requests.get requests.get = get_icon pmid = PMIDPlugin() record = {"identifier" : {"id" : "23175652", "type" : "pmid", "canonical" : "pmid:23175652"}} pmid.detect_provider(record) assert "provider" in record assert "url" in record["provider"] assert record['provider']["url"][0] == "http://jb.asm.org/cgi/pmidlookup?view=long&pmid=23175652", record['provider']["url"][0] requests.get = old_get
def test_09_provider_resolve_doi(self): old_get = requests.get requests.get = get_doi pmid = PMIDPlugin() record = {"identifier" : {"id" : "23175652", "type" : "pmid", "canonical" : "pmid:23175652"}} pmid.detect_provider(record) assert "provider" in record assert "url" in record["provider"] assert record['provider']["url"][0] == "http://jb.asm.org/content/195/3/502", record['provider']['url'] assert record["provider"]["doi"] == "doi:10.1128/JB.01321-12" requests.get = old_get
def test_11_provider_resolve_from_resources(self): old_get = requests.get requests.get = get_linkout pmid = PMIDPlugin() record = {"identifier" : {"id" : "1234567", "type" : "pmid", "canonical" : "pmid:1234567"}} pmid.detect_provider(record) assert "provider" in record assert "url" in record["provider"] assert "http://www.nlm.nih.gov/medlineplus/menopause.html" in record["provider"]["url"], record["provider"]["url"] assert "http://toxnet.nlm.nih.gov/cgi-bin/sis/search/r?dbs+hsdb:@term+@rn+50-28-2" in record["provider"]["url"], record["provider"]["url"] assert len(record['provider']['url']) == 2 requests.get = old_get
def test_08_provider_resolve_not_relevant(self): pmid = PMIDPlugin() record = {} pmid.detect_provider(record) assert len(record.keys()) == 0 record['identifier'] = {} pmid.detect_provider(record) assert len(record['identifier'].keys()) == 0 record['identifier']['id'] = "123" record['identifier']['type'] = "doi" record['identifier']['canonical'] = "doi:123" pmid.detect_provider(record) assert not "provider" in record record['identifier']['type'] = "pmid" del record['identifier']['canonical'] pmid.detect_provider(record) assert not "provider" in record
def test_08_provider_resolve_not_relevant(self): pmid = PMIDPlugin() record = models.MessageObject() pmid.detect_provider(record) assert len(record.record.keys()) == 0 record.id = "123" record.identifier_type = "doi" record.canonical = "doi:123" pmid.detect_provider(record) assert not "provider" in record.record record.identifier_type = "pmid" record.canonical = None pmid.detect_provider(record) assert not "provider" in record.record