def test_12_provider_resolve_fail_doi(self):
old_get = util.http_get
util.http_get = get_doi_fail
pmid = PMIDPlugin()
record = {"identifier" : {"id" : "23175652", "type" : "pmid", "canonical" : "pmid:23175652"}}
record = models.MessageObject(record=record)
with self.assertRaises(plugin.PluginException):
pmid.detect_provider(record)
util.http_get = old_get
def test_10_provider_resolve_from_icon(self):
old_get = requests.get
requests.get = get_icon
pmid = PMIDPlugin()
record = {"identifier" : {"id" : "23175652", "type" : "pmid", "canonical" : "pmid:23175652"}}
pmid.detect_provider(record)
assert "provider" in record
assert "url" in record["provider"]
assert record['provider']["url"][0] == "http://jb.asm.org/cgi/pmidlookup?view=long&pmid=23175652", record['provider']["url"][0]
requests.get = old_get
def test_09_provider_resolve_doi(self):
old_get = requests.get
requests.get = get_doi
pmid = PMIDPlugin()
record = {"identifier" : {"id" : "23175652", "type" : "pmid", "canonical" : "pmid:23175652"}}
pmid.detect_provider(record)
assert "provider" in record
assert "url" in record["provider"]
assert record['provider']["url"][0] == "http://jb.asm.org/content/195/3/502", record['provider']['url']
assert record["provider"]["doi"] == "doi:10.1128/JB.01321-12"
requests.get = old_get
def test_11_provider_resolve_from_resources(self):
old_get = requests.get
requests.get = get_linkout
pmid = PMIDPlugin()
record = {"identifier" : {"id" : "1234567", "type" : "pmid", "canonical" : "pmid:1234567"}}
pmid.detect_provider(record)
assert "provider" in record
assert "url" in record["provider"]
assert "http://www.nlm.nih.gov/medlineplus/menopause.html" in record["provider"]["url"], record["provider"]["url"]
assert "http://toxnet.nlm.nih.gov/cgi-bin/sis/search/r?dbs+hsdb:@term+@rn+50-28-2" in record["provider"]["url"], record["provider"]["url"]
assert len(record['provider']['url']) == 2
requests.get = old_get
def test_08_provider_resolve_not_relevant(self):
pmid = PMIDPlugin()
record = {}
pmid.detect_provider(record)
assert len(record.keys()) == 0
record['identifier'] = {}
pmid.detect_provider(record)
assert len(record['identifier'].keys()) == 0
record['identifier']['id'] = "123"
record['identifier']['type'] = "doi"
record['identifier']['canonical'] = "doi:123"
pmid.detect_provider(record)
assert not "provider" in record
record['identifier']['type'] = "pmid"
del record['identifier']['canonical']
pmid.detect_provider(record)
assert not "provider" in record
def test_08_provider_resolve_not_relevant(self):
pmid = PMIDPlugin()
record = models.MessageObject()
pmid.detect_provider(record)
assert len(record.record.keys()) == 0
record.id = "123"
record.identifier_type = "doi"
record.canonical = "doi:123"
pmid.detect_provider(record)
assert not "provider" in record.record
record.identifier_type = "pmid"
record.canonical = None
pmid.detect_provider(record)
assert not "provider" in record.record
