def test_04_detect_verify_type_error(self):
# create an invalid pmid and assert it is a pmid
pmid = PMIDPlugin()
bjid = {"id" : "a;lkdsjfjdsajadskja", "type" : "pmid"}
record = models.MessageObject(bid=bjid)
with self.assertRaises(models.LookupException):
pmid.type_detect_verify(record)
def test_03_detect_verify_type_ignores(self):
pmid = PMIDPlugin()
bjid = {"id" : "whatever", "type" : "doi"}
pmid.type_detect_verify(bjid)
assert bjid['type'] == "doi"
bjid = {"key" : "value"}
pmid.type_detect_verify(bjid)
assert not bjid.has_key("type")
def test_01_detect_verify_type_real_pmids(self):
pmid = PMIDPlugin()
counter = 0
for d in PMIDS:
bjid = {'id' : d}
pmid.type_detect_verify(bjid)
assert bjid.has_key("type")
assert bjid["type"] == "pmid"
counter += 1
assert counter == len(PMIDS)
assert counter > 0
def test_03_detect_verify_type_ignores(self):
pmid = PMIDPlugin()
bjid = {"id" : "whatever", "type" : "doi"}
record = models.MessageObject(bid=bjid)
pmid.type_detect_verify(record)
assert bjid['type'] == "doi"
bjid = {"key" : "value"}
record = models.MessageObject(record={"identifier" : bjid})
pmid.type_detect_verify(record)
assert not bjid.has_key("type")
def test_01_detect_verify_type_real_pmids(self):
pmid = PMIDPlugin()
counter = 0
for d in PMIDS:
bjid = {'id' : d}
record = models.MessageObject(bid=bjid)
pmid.type_detect_verify(record)
assert bjid.has_key("type")
assert bjid["type"] == "pmid"
counter += 1
assert counter == len(PMIDS)
assert counter > 0
def test_02_detect_verify_type_not_pmids(self):
#Test the various erroneous PMID possibilities, which will include:
#- less than 1 and more than 8 digits
#- random strings (i.e. not just digits)
pmid = PMIDPlugin()
# some random digits
bjid = {'id' : 'qp23u4ehjkjewfiuwqr'} # random numbers and digits
record = models.MessageObject(bid=bjid)
pmid.type_detect_verify(record)
assert not bjid.has_key("type")
bjid = {'id' : 'qp23u4.10238765.jewfiuwqr'} # has an 8 digit substring in it
# (therefore also has a 1,2..7-digit substring in it)
record = models.MessageObject(bid=bjid)
pmid.type_detect_verify(record)
assert not bjid.has_key("type")
# less than 1 and more than 8 digits
bjid = {'id' : ''} # well, less than 1 digit doesn't exist
# and letters are covered elsewhere...
record = models.MessageObject(bid=bjid)
pmid.type_detect_verify(record)
assert not bjid.has_key("type")
bjid = {'id' : '123456789'}
record = models.MessageObject(bid=bjid)
pmid.type_detect_verify(record)
assert not bjid.has_key("type")
def test_04_detect_verify_type_error(self):
# create an invalid pmid and assert it is a pmid
pmid = PMIDPlugin()
bjid = {"id" : "a;lkdsjfjdsajadskja", "type" : "pmid"}
with self.assertRaises(model_exceptions.LookupException):
pmid.type_detect_verify(bjid)
