Python SuperTreeInputTrees Beispiele

Beispiel #1

from p4.SuperTreeSupport import SuperTreeInputTrees

stit = SuperTreeInputTrees('balanced64.nex')
stit.writeInputTreesToFile = True
stit.outputFile = 'inputtreesWithDist.tre'
stit.useTaxonDistribution = True
stit.noOutputTrees = 20
stit.generateInputTrees()

Beispiel #2

Datei: sInputTreesWithDist.py Projekt: Anaphory/p4-phylogeny

from p4.SuperTreeSupport import SuperTreeInputTrees

stit = SuperTreeInputTrees('balanced64.nex')
stit.writeInputTreesToFile = True
stit.outputFile = 'inputtreesWithDist.tre'
stit.useTaxonDistribution = True 
stit.noOutputTrees = 20
stit.generateInputTrees()

Beispiel #3

Datei: sInputTreesBuildDist.py Projekt: Anaphory/p4-phylogeny

from p4.SuperTreeSupport import SuperTreeInputTrees

stit = SuperTreeInputTrees('balanced64.nex', distributionTrees='FelidaeRVS.tre')
stit.writeInputTreesToFile = True
stit.outputFile = 'inputtreesBuiltDist.tre'
stit.noOutputTrees = 20
stit.generateInputTrees()

Beispiel #4

Datei: sInputTreesBuildDist.py Projekt: sdwfrost/p4-phylogeny

from p4.SuperTreeSupport import SuperTreeInputTrees

stit = SuperTreeInputTrees('balanced64.nex',
                           distributionTrees='FelidaeRVS.tre')
stit.writeInputTreesToFile = True
stit.outputFile = 'inputtreesBuiltDist.tre'
stit.noOutputTrees = 20
stit.generateInputTrees()

Beispiel #5

from p4.SuperTreeSupport import SuperTreeInputTrees

stit = SuperTreeInputTrees('balanced64.nex')
stit.writeInputTreesToFile = True
stit.outputFile = 'inputtrees.tre'
stit.noTaxaToRemove = 32
stit.noOutputTrees = 20
stit.generateInputTrees()