def draw(self, rbcoords, index):
from pele.systems._opengl_tools import draw_box
from pele.systems.morse_bulk import put_in_box
cc = self.aatopology.coords_adapter(rbcoords)
put_in_box(cc.posRigid, self.boxvec)
super(OTPBulk, self).draw(rbcoords, index, shift_com=False)
draw_box(self.boxvec)
def draw(self, rbcoords, index):
from pele.systems._opengl_tools import draw_box
from pele.systems.morse_bulk import put_in_box
cc = self.aatopology.coords_adapter(rbcoords)
put_in_box(cc.posRigid, self.boxvec)
super(OTPBulk, self).draw(rbcoords, index, shift_com=False)
draw_box(self.boxvec)
def draw(self, coordslinear, index):
from pele.systems._opengl_tools import draw_atomic_binary_polydisperse, draw_box
put_in_box(coordslinear, self.boxvec)
draw_atomic_binary_polydisperse(coordslinear,
index,
bdim=self.boxvec.size,
radii=self.radii)
draw_box(self.boxvec)
def draw(self, coordslinear, index):
"""draw the frozen atoms differently from the mobile atoms"""
from ._opengl_tools import draw_atoms, draw_box
full_coords = self.coords_converter.get_full_coords(coordslinear)
put_in_box(full_coords, self.boxvec)
rA = 0.5
rB = 0.44
# draw A atoms
if index == 1:
cA = [0.65, 0.0, 0.0, 1.]
cB = [0.25, 0.00, 0., 1.]
cF = [0.24, 0.25, 0.25, 1.]
else:
cA = cB = cF = [0.00, 0.65, 0., 1.]
draw_atoms(full_coords, self.mobile_Aatoms, radius=rA, color=cA)
draw_atoms(full_coords, self.frozen_Aatoms, radius=rA, color=cF)
draw_atoms(full_coords, self.mobile_Batoms, radius=rB, color=cB)
draw_atoms(full_coords, self.frozen_Batoms, radius=rB, color=cF)
draw_box(self.boxvec)
def draw(self, coordslinear, index):
"""draw the frozen atoms differently from the mobile atoms"""
from ._opengl_tools import draw_atoms, draw_box
full_coords = self.coords_converter.get_full_coords(coordslinear)
put_in_box(full_coords, self.boxvec)
rA = 0.5
rB = 0.44
# draw A atoms
if index == 1:
cA = [0.65, 0.0, 0.0, 1.]
cB = [0.25, 0.00, 0., 1.]
cF = [0.24, 0.25, 0.25, 1.]
else:
cA = cB = cF = [0.00, 0.65, 0., 1.]
draw_atoms(full_coords, self.mobile_Aatoms, radius=rA, color=cA)
draw_atoms(full_coords, self.frozen_Aatoms, radius=rA, color=cF)
draw_atoms(full_coords, self.mobile_Batoms, radius=rB, color=cB)
draw_atoms(full_coords, self.frozen_Batoms, radius=rB, color=cF)
draw_box(self.boxvec)
def draw(self, coordslinear, index):
from pele.systems._opengl_tools import draw_box
put_in_box(coordslinear, self.boxvec)
BLJCluster.draw(self, coordslinear, index, subtract_com=False)
draw_box(self.boxvec)
def draw(self, coordslinear, index):
from pele.systems._opengl_tools import draw_atomic_binary_polydisperse, draw_box
put_in_box(coordslinear, self.boxvec)
draw_atomic_binary_polydisperse(coordslinear, index, bdim=self.boxvec.size, radii=self.radii)
draw_box(self.boxvec)
def draw(self, coordslinear, index):
from pele.systems._opengl_tools import draw_box
put_in_box(coordslinear, self.boxvec)
BLJCluster.draw(self, coordslinear, index, subtract_com=False)
draw_box(self.boxvec)
