def _prepObj(self, args):
if (not PSToolInterface.hasArgument('counts', args)
and not PSToolInterface.hasArgument('diffreg', args)) or (
args.counts == None and args.diffreg == None):
raise argparse.ArgumentParser().error(
"error: Either counts [--counts] or diffreg results [--diffreg] must be set!"
)
simArgs = self._makeArguments(args)
simArgs.pltcfg = PlotConfig.fromParserArgs(simArgs)
return FoldChangeFeatureCountsAnalysis(simArgs)
def _prepObj(self, args):
simArgs = self._makeArguments(args)
simArgs.pltcfg = PlotConfig.fromParserArgs(simArgs)
return SquigglePlotter(simArgs)
def _prepObj(self, args):
simArgs = self._makeArguments(args)
simArgs.pltcfg = PlotConfig.fromParserArgs(simArgs)
return SecondaryAlignmentAnalysis(simArgs)
def _prepObj(self, args):
simArgs = self._makeArguments(args)
simArgs.pltcfg = PlotConfig.fromParserArgs(simArgs)
return FoldChangeTopRegulatedAnalysis(simArgs)
def _prepObj(self, args):
simArgs = self._makeArguments(args)
simArgs.pltcfg = PlotConfig.fromParserArgs(simArgs)
return QualityPosition(simArgs)
def _prepObj(self, args):
simArgs = self._makeArguments(args)
simArgs.pltcfg = PlotConfig.fromParserArgs(simArgs)
return SimilarityAnalysis(simArgs)
def _prepObj(self, args):
simArgs = self._makeArguments(args)
simArgs.pltcfg = PlotConfig.fromParserArgs(simArgs)
return FoldChangeSimilarity(simArgs)