def protoBinSpecHelpTextForUserBinSource(cls):
core = HtmlCore()
core.emphasize(
'Allowed values: any number (integer). The selected regions are divided '
'into bins of this size. "k" and "m" denotes thousand and million bps, '
'respectively. "*" means the whole region / chromosome. '
'Example: "100k"')
return str(core)
def protoRegSpecHelpTextForUserBinSource(cls):
core = HtmlCore()
core.emphasize(
'Allowed values: region specification as in UCSC Genome browser '
'(with 1 as the first position). "*" means the '
'whole genome, and "k" and "m" denotes thousand and million bps, '
'respectively. Several regions may be specified if separated by comma. '
'If the end position is omitted, it is set equal to the end of the '
'chromosome. Example: "chr1:1-20m, chr2:10m-"')
return str(core)
def protoBinSpecHelpTextForUserBinSource(cls):
core = HtmlCore()
core.emphasize(
'Allowed values: comma separated list of Ensembl gene ids. '
'"*" means all genes. Example: "ENSG00000208234, ENSG00000199674"')
core.styleInfoBegin(styleClass='infomessagesmall')
core.descriptionLine(
'Note', 'all overlapping gene isoforms have been merged to form '
'"supergenes" with positions from the start of the gene '
'located most upstream, to the end of the gene located '
'most downstream.')
core.styleInfoEnd()
return str(core)
def protoBinSpecHelpTextForUserBinSource(cls):
core = HtmlCore()
core.emphasize(
'Allowed values: comma separated list of cytobands (chromosome bands). '
'"*" means all cytobands. Example: "1p36.33,1p36.23"')
return str(core)
def protoBinSpecHelpTextForUserBinSource(cls):
core = HtmlCore()
core.emphasize(
'Allowed values: comma separated list of chromosome arms. '
'"*" means all chromosome arms. Example: "chr1p,chr1q,chr2p"')
return str(core)