def protoBinSpecHelpTextForUserBinSource(cls): core = HtmlCore() core.emphasize( 'Allowed values: any number (integer). The selected regions are divided ' 'into bins of this size. "k" and "m" denotes thousand and million bps, ' 'respectively. "*" means the whole region / chromosome. ' 'Example: "100k"') return str(core)
def protoRegSpecHelpTextForUserBinSource(cls): core = HtmlCore() core.emphasize( 'Allowed values: region specification as in UCSC Genome browser ' '(with 1 as the first position). "*" means the ' 'whole genome, and "k" and "m" denotes thousand and million bps, ' 'respectively. Several regions may be specified if separated by comma. ' 'If the end position is omitted, it is set equal to the end of the ' 'chromosome. Example: "chr1:1-20m, chr2:10m-"') return str(core)
def protoBinSpecHelpTextForUserBinSource(cls): core = HtmlCore() core.emphasize( 'Allowed values: comma separated list of Ensembl gene ids. ' '"*" means all genes. Example: "ENSG00000208234, ENSG00000199674"') core.styleInfoBegin(styleClass='infomessagesmall') core.descriptionLine( 'Note', 'all overlapping gene isoforms have been merged to form ' '"supergenes" with positions from the start of the gene ' 'located most upstream, to the end of the gene located ' 'most downstream.') core.styleInfoEnd() return str(core)
def protoBinSpecHelpTextForUserBinSource(cls): core = HtmlCore() core.emphasize( 'Allowed values: comma separated list of cytobands (chromosome bands). ' '"*" means all cytobands. Example: "1p36.33,1p36.23"') return str(core)
def protoBinSpecHelpTextForUserBinSource(cls): core = HtmlCore() core.emphasize( 'Allowed values: comma separated list of chromosome arms. ' '"*" means all chromosome arms. Example: "chr1p,chr1q,chr2p"') return str(core)