def test_mass_consistent_reactions_returns_compounds(self):
exchange = {'rxn_1', 'rxn_6'}
_, compounds = massconsistency.check_reaction_consistency(
self.model, exchange=exchange, solver=self.solver)
for c, value in compounds:
self.assertIn(c, self.model.compounds)
self.assertGreaterEqual(value, 1.0)
def test_reaction_consistency_with_zeromass(self):
reactions, _ = massconsistency.check_reaction_consistency(
self.model, solver=self.solver, zeromass={Compound('Z')})
reactions = dict(reactions)
for r, value in iteritems(reactions):
self.assertAlmostEqual(value, 0)
def test_mass_consistent_reactions_returns_compounds(self):
exchange = { 'rxn_1', 'rxn_6' }
_, compounds = massconsistency.check_reaction_consistency(
self.model, exchange=exchange, solver=self.solver)
for c, value in compounds:
self.assertIn(c, self.model.compounds)
self.assertGreaterEqual(value, 1.0)
def test_reaction_consistency_with_zeromass(self):
reactions, _ = massconsistency.check_reaction_consistency(
self.model, solver=self.solver, zeromass={Compound('Z')})
reactions = dict(reactions)
for r, value in iteritems(reactions):
self.assertAlmostEqual(value, 0)
def test_reaction_consistency_with_zeromass(self):
reactions, _ = massconsistency.check_reaction_consistency(
self.model, solver=self.solver, zeromass={'Z'})
reactions = dict(reactions)
for r, value in reactions.iteritems():
self.assertEqual(value, 0)
def test_mass_consistent_reactions_returns_reactions(self):
exchange = {'rxn_1', 'rxn_6'}
reactions, _ = massconsistency.check_reaction_consistency(
self.model, exchange=exchange, solver=self.solver)
for r, residual in reactions:
self.assertIn(r, self.model.reactions)
def test_mass_consistent_reactions_returns_reactions(self):
exchange = { 'rxn_1', 'rxn_6' }
reactions, _ = massconsistency.check_reaction_consistency(
self.model, exchange=exchange, solver=self.solver)
for r, residual in reactions:
self.assertIn(r, self.model.reactions)
