def run_scan(scan, run_conf=None):
run_manager = RunManager(_configuration_folder)
run_manager.run_run(scan, run_conf=run_conf)
error_msg = ''
try:
error_msg = str(run_manager.current_run.err_queue.get(timeout=1)[1])
except Empty:
pass
return run_manager.current_run._run_status == 'FINISHED', error_msg, run_manager.current_run.output_filename, run_manager.current_run._default_run_conf, run_manager.current_run.__class__.__name__
def run_scan(scan, run_conf=None):
run_manager = RunManager(_configuration_folder)
run_manager.run_run(scan, run_conf=run_conf)
error_msg = ''
try:
error_msg = str(run_manager._current_run.err_queue.get(timeout=1)[1])
except Empty:
pass
return run_manager._current_run._run_status == 'FINISHED', error_msg, run_manager._current_run.output_filename, run_manager._current_run._default_run_conf, run_manager._current_run.__class__.__name__
def test_global_register(self, mock_send_commands, mock_configure_pixel):
run_manager = RunManager('test_interface/configuration.yaml')
run_manager.run_run(RegisterTest, run_conf={'test_pixel': False})
error_msg = 'Global register test failed. '
try:
error_msg += str(run_manager.current_run.err_queue.get(timeout=1)[1])
except Empty:
pass
ok = (run_manager.current_run._run_status == 'FINISHED')
self.assertTrue(ok, msg=error_msg)
def test_global_register(self, mock_configure_pixel, mock_send_commands):
run_manager = RunManager('test_interface/configuration.yaml')
run_manager.run_run(RegisterTest, run_conf={'test_pixel': False})
error_msg = 'Global register test failed. '
try:
error_msg += str(
run_manager._current_run.err_queue.get(timeout=1)[1])
except Empty:
pass
ok = (run_manager._current_run._run_status == 'FINISHED')
self.assertTrue(ok, msg=error_msg)
# run_conf[item] = pp.GetConfigParameter(item)
# except:
# pass
rmngr = RunManager(
'../configuration.yaml') # TODO: get conf from EUDAQ
pp.Configuring = True
# check for start of run cmd from RunControl
while not pp.StartingRun and not pp.Terminating:
if pp.Configuring:
break
sleep(1)
# check if we are starting:
if pp.StartingRun:
print "Starting run..."
# join = rmngr.run_run(EudaqExtTriggerScan, run_conf=run_conf, use_thread=True)
join = rmngr.run_run(EudaqExtTriggerScan, use_thread=True)
sleep(5)
pp.StartingRun = True # set status and send BORE
# starting to run
while join(timeout=1) is None:
if pp.Error or pp.Terminating:
rmngr.abort_current_run()
if pp.StoppingRun:
rmngr.stop_current_run()
status = join()
# abort conditions
if status is not run_status.finished or pp.Error or pp.Terminating:
pp.StoppingRun = False # set status and send EORE
# check if the run is stopping regularly
if pp.StoppingRun:
pp.StoppingRun = True # set status and send EORE
from pybar.run_manager import RunManager # importing run manager
from pybar.scans.scan_analog import AnalogScan
from pybar.scans.scan_ext_trigger_gdac import ExtTriggerGdacScan
from pybar.run_manager import run_status
if __name__ == "__main__":
runmngr = RunManager('../../pybar/configuration.yaml') # loading configuration file, specifying hardware configuration and module configuration.
#
# Running primlist:
runmngr.run_primlist('example_run_manager.plst', skip_remaining=True) # executing primlist.plst file, specific scan parameters are set inside the primlist file, skip remaining scans on error
# Each scan has a default configuration, which is defined inside the corresponding scan file in /host/pybar/scans/. It is not necessary to define scan parameters inside primlist file.
#
# Running single scan and changing scan parameters:
join = runmngr.run_run(run=AnalogScan, run_conf={"scan_parameters": [('PlsrDAC', 500)], "n_injections": 1000}, use_thread=True) # run_run returns a function object when use_thread is True
status = join()
print 'Status:', status # will wait for scan to be finished and returns run status
#
# Or use a run configuration file:
status = runmngr.run_run(run=AnalogScan, run_conf="run_configuration.txt") # using no thread
print 'Status:', status
#
# Example for a loop:
for gdac in range(50, 200, 10):
join = runmngr.run_run(ExtTriggerGdacScan, run_conf={'scan_parameters': {'GDAC': gdac}}, use_thread=True) # use thread
print 'Status:', join(timeout=5) # join has a timeout, return None if run has not yet finished
runmngr.abort_current_run() # stopping/aborting run from outside
if join() != run_status.finished: # status OK?
print 'ERROR!'
break # jump out
#
# After finishing the primlist/run: you will find the module data relative to the configuration.yaml file.
charge_calibration[column, row, :, 1])) and np.all(
np.isfinite(charge_calibration[column, row, :, 3])):
mean_signal_to_noise += (
charge_calibration[column, row, :, 1] /
charge_calibration[column, row, :, 3])
mean_signal_to_noise /= valid_pixel[0].shape[0]
return mean_signal_to_noise
if __name__ == "__main__":
plsr_dacs = [40, 50, 60, 80, 130, 180, 230, 280, 340, 440, 540, 640,
740] # PlsrDAC setting for hit OR calibration scan
runmngr = RunManager(r'../../pybar/configuration.yaml')
runmngr.run_run(run=FastThresholdScan) # initial threshold check
actual_vthin_alt_fine = runmngr.current_run.register.get_global_register_value(
"Vthin_AltFine")
sns = [] # SN values
# Take data
for dis_vbn in [
40,
]: # analog discriminator bias loop
for vthin_alt_fine in range(actual_vthin_alt_fine, 256,
100): # threshold loop
for prmp_vbpf in range(0, 256, 32): # feedback current loop
runmngr.current_run.register.set_global_register_value(
"PrmpVbpf", prmp_vbpf)
runmngr.current_run.register.set_global_register_value(
"Vthin_AltFine", vthin_alt_fine)
#
# (from configuration.yaml)
# fe_configuration: 1
# ...
#
# This will retain the configuration for the following scans.
# Please note: no configuration file exists at this stage because no run was executed so far.
#
# Executing runs defined by a primlist:
runmngr.run_primlist('example_run_manager.plst', skip_remaining=True) # executing primlist.plst file, specific run configuration are set inside the primlist file, skip remaining scans on error
# press Ctrl-C to abort the run at any time
# Each scan has a default run configuration, which is defined inside the corresponding scan file in /host/pybar/scans/.
# It is not necessary to add run parameters to the primlist file. If not given they are taken from the default run configuration (_default_run_conf).
#
# Running a single scan and changing default run configuration (_default_run_conf):
join = runmngr.run_run(run=AnalogScan, run_conf={"scan_parameters": [('PlsrDAC', 500)], "n_injections": 1000}, use_thread=True) # run_run returns a function object when use_thread is True
status = join() # waiting here for finishing the run, press Ctrl-C to abort the run at any time
print 'Status:', status # will wait for run to be finished and returns run status
#
# Or use a run configuration file:
status = runmngr.run_run(run=AnalogScan, run_conf="example_run_manager_run_config.txt") # using no thread
print 'Status:', status
#
# Example for a loop of runs, which is failing:
for delay in range(14, 50, 16):
join = runmngr.run_run(ExtTriggerScan, run_conf={"trigger_delay": delay, "no_data_timeout": 60}, use_thread=True) # use thread
print 'Status:', join(timeout=5) # join has a timeout, return None if run has not yet finished
runmngr.abort_current_run("Calling abort_current_run(). This scan was aborted by intention") # stopping/aborting run from outside (same effect has Ctrl-C)
if join() != run_status.finished: # status OK?
print 'ERROR! This error was made by intention!'
break # jump out
from pybar.scans.scan_digital import DigitalScan
from pybar.scans.scan_analog import AnalogScan
from pybar.scans.scan_threshold import ThresholdScan
from pybar.scans.tune_fei4 import Fei4Tuning
from pybar.scans.tune_stuck_pixel import StuckPixelScan
from pybar.scans.tune_noise_occupancy import NoiseOccupancyScan
from pybar.scans.tune_merged_pixels import MergedPixelsTuning
# additional run configuration (optinal)
run_conf = None # use path to YAML file, or dict
if __name__ == "__main__":
runmngr = RunManager('../../pybar/configuration.yaml') # configuration YAML file, open it for more details, it may contain run configuration
# pre tuning
status = runmngr.run_run(run=DigitalScan, run_conf=run_conf)
print 'Status:', status
status = runmngr.run_run(run=ThresholdScan, run_conf=run_conf)
print 'Status:', status
status = runmngr.run_run(run=AnalogScan, run_conf=run_conf)
print 'Status:', status
# tuning
status = runmngr.run_run(run=Fei4Tuning, run_conf=run_conf)
print 'Status:', status
# post tuning
status = runmngr.run_run(run=ThresholdScan, run_conf=run_conf)
print 'Status:', status
# try:
# run_conf[item] = pp.GetConfigParameter(item)
# except:
# pass
rmngr = RunManager("../configuration.yaml") # TODO: get conf from EUDAQ
pp.Configuring = True
# check for start of run cmd from RunControl
while not pp.StartingRun and not pp.Terminating:
if pp.Configuring:
break
sleep(1)
# check if we are starting:
if pp.StartingRun:
print "Starting run..."
# join = rmngr.run_run(EudaqExtTriggerScan, run_conf=run_conf, use_thread=True)
join = rmngr.run_run(EudaqExtTriggerScan, use_thread=True)
sleep(5)
pp.StartingRun = True # set status and send BORE
# starting to run
while join(timeout=1) is None:
if pp.Error or pp.Terminating:
rmngr.abort_current_run()
if pp.StoppingRun:
rmngr.stop_current_run()
status = join()
# abort conditions
if status is not run_status.finished or pp.Error or pp.Terminating:
pp.StoppingRun = False # set status and send EORE
# check if the run is stopping regularly
if pp.StoppingRun:
pp.StoppingRun = True # set status and send EORE
# except Exception:
# pass
if runmngr:
runmngr.close()
runmngr = None
runmngr = RunManager(
'configuration.yaml') # TODO: get conf from EUDAQ
pp.Configuring = True
# check if we are starting:
if pp.StartingRun:
run_number = pp.GetRunNumber()
logging.info("Starting run EUDAQ run %d..." % run_number)
# join = runmngr.run_run(EudaqExtTriggerScan, run_conf=run_conf, use_thread=True)
join = runmngr.run_run(
EudaqExtTriggerScan,
use_thread=True,
run_conf={"comment": "EUDAQ run %d" % run_number})
# sleep(5)
# pp.StartingRun = True # set status and send BORE
# starting run
while join(timeout=1) == run_status.running:
if pp.Error or pp.Terminating:
logging.error("EUDAQ run %d forcibly stopped" % run_number)
runmngr.cancel_current_run(msg="Run stopped by RunControl")
status = join()
logging.info("Run status: %s" % status)
# abort conditions
if pp.StoppingRun:
pp.StoppingRun = True # set status and send EORE
if runmngr is not None:
runmngr.close()
# Tuning
cref = 12
target_threshold = 34
target_charge = 300
target_tot = 9
# TDC measurements
plsr_dacs = [target_threshold, 40, 50, 60, 80, 100, 120, 150, 200, 250, 300, 350, 400, 500, 600, 700, 800] # PlsrDAC range for TDC calibration, should start at threshold
col_span = [55, 75]#[50, 78] # pixel column range to use in TDC scans
row_span = [125, 225]#[20, 315] # pixel row range to use in TDC scans
tdc_pixel = make_box_pixel_mask_from_col_row(column=[col_span[0], col_span[1]], row=[row_span[0], row_span[1]]) # edge pixel are not used in analysis
runmngr = RunManager('configuration.yaml')
# IV scan
runmngr.run_run(run=IVScan, run_conf={"voltages": np.arange(-1, max_iv_voltage - 1, -1), "max_voltage": max_iv_voltage, "bias_voltage": bias_voltage, "minimum_delay": 0.5})
# FE check and complete tuning
runmngr.run_run(run=RegisterTest)
runmngr.run_run(run=DigitalScan) # digital scan with std. settings
if runmngr.current_run.register.flavor == 'fei4a': # FEI4 A related config changes, Deactivate noisy edge columns if FE-I4A
runmngr.current_run.register.set_global_register_value("DisableColumnCnfg", 549755813891) # Disable noisy columns
runmngr.current_run.register.set_global_register_value("Cref", cref) # Set correct cref
runmngr.current_run.register.save_configuration(runmngr.current_run.register.configuration_file)
runmngr.run_run(run=DigitalScan) # repeat digital scan with specific settings
runmngr.run_run(run=Fei4Tuning, run_conf={'target_threshold': target_threshold, 'target_tot': target_tot, 'target_charge': target_charge}, catch_exception=False)
runmngr.run_run(run=AnalogScan, run_conf={'scan_parameters': [('PlsrDAC', target_charge)]})
runmngr.run_run(run=FastThresholdScan)
runmngr.run_run(run=StuckPixelScan)
# This will retain the configuration for the following scans.
# Please note: no configuration file exists at this stage because no run was executed so far.
#
# Executing runs defined by a primlist:
runmngr.run_primlist(
'example_run_manager.plst', skip_remaining=True
) # executing primlist.plst file, specific run configuration are set inside the primlist file, skip remaining scans on error
# press Ctrl-C to abort the run at any time
# Each scan has a default run configuration, which is defined inside the corresponding scan file in /host/pybar/scans/.
# It is not necessary to add run parameters to the primlist file. If not given they are taken from the default run configuration (_default_run_conf).
#
# Running a single scan and changing default run configuration (_default_run_conf):
join = runmngr.run_run(
run=AnalogScan,
run_conf={
"scan_parameters": [('PlsrDAC', 500)],
"n_injections": 1000
},
use_thread=True
) # run_run returns a function object when use_thread is True
status = join(
) # waiting here for finishing the run, press Ctrl-C to abort the run at any time
print 'Status:', status # will wait for run to be finished and returns run status
#
# Or use a run configuration file:
status = runmngr.run_run(
run=AnalogScan,
run_conf="example_run_manager_run_config.txt") # using no thread
print 'Status:', status
#
# Example for a loop of runs, which is failing:
for delay in range(14, 50, 16):
target_threshold, 40, 50, 60, 80, 100, 120, 150, 200, 250, 300, 350,
400, 500, 600, 700, 800
] # PlsrDAC range for TDC calibration, should start at threshold
col_span = [55, 75] # [50, 78] # pixel column range to use in TDC scans
row_span = [125, 225] # [20, 315] # pixel row range to use in TDC scans
tdc_pixel = make_box_pixel_mask_from_col_row(
column=[col_span[0], col_span[1]],
row=[row_span[0], row_span[1]]) # edge pixel are not used in analysis
runmngr = RunManager('configuration.yaml')
# IV scan
runmngr.run_run(run=IVScan,
run_conf={
"voltages": np.arange(-1, max_iv_voltage - 1, -1),
"max_voltage": max_iv_voltage,
"bias_voltage": bias_voltage,
"minimum_delay": 0.5
})
# FE check and complete tuning
runmngr.run_run(run=RegisterTest)
runmngr.run_run(run=DigitalScan) # digital scan with std. settings
if runmngr.current_run.register.flavor == 'fei4a': # FEI4 A related config changes, Deactivate noisy edge columns if FE-I4A
runmngr.current_run.register.set_global_register_value(
"DisableColumnCnfg", 549755813891) # Disable noisy columns
runmngr.current_run.register.set_global_register_value(
"Cref", cref) # Set correct cref
runmngr.current_run.register.save_configuration(
runmngr.current_run.register.configuration_file)
charge_calibration = in_file_h5.root.HitOrCalibration[:]
plsr_dacs = in_file_h5.root.HitOrCalibration._v_attrs.scan_parameter_values
valid_pixel = np.where(charge_calibration.sum(axis=(2, 3)) > 0) # valid pixel have data and a calibration (that is any charge(TDC) calibration != 0)
mean_signal_to_noise = np.zeros(len(plsr_dacs))
for (column, row) in np.column_stack(valid_pixel):
if np.all(np.isfinite(charge_calibration[column, row, :, 1])) and np.all(np.isfinite(charge_calibration[column, row, :, 3])):
mean_signal_to_noise += (charge_calibration[column, row, :, 1] / charge_calibration[column, row, :, 3])
mean_signal_to_noise /= valid_pixel[0].shape[0]
return mean_signal_to_noise
if __name__ == "__main__":
plsr_dacs = [40, 50, 60, 80, 130, 180, 230, 280, 340, 440, 540, 640, 740]
runmngr = RunManager(r'../../pybar/configuration.yaml')
runmngr.run_run(run=FastThresholdScan)
sns = []
actual_vthin_alt_fine = runmngr.current_run.register.get_global_register_value("Vthin_AltFine")
for dis_vbn in [40, ]:
for vthin_alt_fine in range(actual_vthin_alt_fine, 256, 100):
for prmp_vbpf in range(0, 256, 32):
runmngr.current_run.register.set_global_register_value("PrmpVbpf", prmp_vbpf)
runmngr.current_run.register.set_global_register_value("Vthin_AltFine", vthin_alt_fine)
runmngr.current_run.register.set_global_register_value("DisVbn", dis_vbn)
runmngr.run_run(run=HitOrCalibration, run_conf={
'reset_rx_on_error': True,
"pixels": ((10, 10), (30, 100), (50, 200), (70, 300)),
"scan_parameters": [('column', None),
from pybar.scans.scan_threshold import ThresholdScan
from pybar.scans.tune_fei4 import Fei4Tuning
from pybar.scans.tune_stuck_pixel import StuckPixelScan
from pybar.scans.tune_noise_occupancy import NoiseOccupancyScan
from pybar.scans.tune_merged_pixels import MergedPixelsTuning
# additional run configuration (optinal)
run_conf = None # use path to YAML file, or dict
if __name__ == "__main__":
runmngr = RunManager(
'../../pybar/configuration.yaml'
) # configuration YAML file, open it for more details, it may contain run configuration
# pre tuning
status = runmngr.run_run(run=DigitalScan, run_conf=run_conf)
print 'Status:', status
status = runmngr.run_run(run=ThresholdScan, run_conf=run_conf)
print 'Status:', status
status = runmngr.run_run(run=AnalogScan, run_conf=run_conf)
print 'Status:', status
# tuning
status = runmngr.run_run(run=Fei4Tuning, run_conf=run_conf)
print 'Status:', status
# post tuning
status = runmngr.run_run(run=ThresholdScan, run_conf=run_conf)
print 'Status:', status