def pyrocko_station(network_code, station, location):
return model.Station(network=network_code,
station=station.code(),
location=location.code(),
lat=location.latitude(),
lon=location.longitude(),
elevation=location.elevation())
def grok_station_xml(data, tmin, tmax):
stations = {}
for (sta, sta_epo, cha, cha_epo) in xmlzip(data, (
'Station', 'StationEpoch', 'Channel', 'Epoch')):
sta_beg, sta_end, cha_beg, cha_end = [tdatetime(x) for x in (
sta_epo.StartDate, sta_epo.EndDate, cha_epo.StartDate,
cha_epo.EndDate)]
if not (sta_beg <= tmin and tmax <= sta_end and
cha_beg <= tmin and tmax <= cha_end):
continue
nslc = tuple([str(x.strip()) for x in (
sta.net_code, sta.sta_code, cha.loc_code, cha.chan_code)])
lat, lon, ele, dep, azi, dip = [
float(cha_epo.attrs[x])
for x in 'Lat Lon Elevation Depth Azimuth Dip'.split()]
nsl = nslc[:3]
if nsl not in stations:
stations[nsl] = model.Station(
nsl[0], nsl[1], nsl[2], lat, lon, ele, dep)
stations[nsl].add_channel(model.Channel(nslc[-1], azi, dip))
return stations.values()
def station_distribution(origin, rings, **kwargs):
'''
origin is a tuple with (lat, lon).
rings is a list of lists with [radius, n stations].
'''
rotate = {}
if kwargs.get('rotate', False):
rotate = kwargs['rotate']
stations = []
olat, olon = origin
for radius, N in rings:
azis = [360. * (n + 1) / N for n in range(N)]
try:
azis = [azi + rotate[radius] for azi in azis]
map((lambda x: x % 360), azis)
except KeyError:
pass
for azi in azis:
lat, lon = lat_lon_from_dist_azi(olat, olon, radius, azi)
stations.append(
model.Station(network=str(azi_to_location_digits(azi)),
station=str(x_to_station_digits(radius)),
lat=lat,
lon=lon))
return stations
def get_stations(self):
if self._stations is None:
if self.with_channels:
channels = []
for comp in ('BHN', 'BHE', 'BHZ'):
channels.append(model.station.Channel(comp))
else:
channels = None
stations = []
for istation in range(self.nstations):
lat, lon = self.get_latlon(istation)
net, sta, loc = self.nsl(istation)
station = model.Station(net,
sta,
loc,
lat=lat,
lon=lon,
channels=channels)
stations.append(station)
self._stations = stations
return self._stations
def testProjectionsZOnly(self):
km = 1000.
ev = model.Event(lat=-10, lon=150., depth=0.0)
for azi in num.linspace(0., 360., 37):
lat, lon = orthodrome.ne_to_latlon(ev.lat, ev.lon,
10. * km * math.cos(azi),
10. * km * math.sin(azi))
sta = model.Station(lat=lat, lon=lon)
sta.set_event_relative_data(ev)
sta.set_channels_by_name('BHZ', 'BHN', 'BHE')
traces = [
trace.Trace(channel='BHZ', ydata=num.array([1.0])),
]
projected = []
for m, in_channels, out_channels in sta.guess_projections_to_enu():
projected.extend(
trace.project(traces, m, in_channels, out_channels))
def g(traces, cha):
for tr in traces:
if tr.channel == cha:
return tr
z = g(projected, 'U')
assert (near(z.ydata[0], 1.0, 0.001))
def get_stations(self):
if self._stations is None:
if self.channels:
channels = [model.station.Channel(c) for c in self.channels]
else:
channels = None
stations = []
for istation in range(self.nstations):
lat, lon = self.get_latlon(istation)
net, sta, loc = self.nsl(istation)
station = model.Station(net,
sta,
loc,
lat=lat,
lon=lon,
channels=channels)
stations.append(station)
self._stations = stations
return self._stations
def get_stations(self):
if self._stations is None:
if self.channels:
channels = [model.station.Channel(c) for c in self.channels]
else:
channels = None
stations = []
for istation in range(self.nstations):
lat, lon, north_shift, east_shift, depth = map(
float, self.get_coordinates(istation))
net, sta, loc = self.nsl(istation)
station = model.Station(net,
sta,
loc,
lat=lat,
lon=lon,
north_shift=north_shift,
east_shift=east_shift,
depth=depth,
channels=channels)
stations.append(station)
self._stations = stations
return self._stations
def setup_stations(lats, lons, names, networks, event, rotate=True):
"""
Setup station objects, based on station coordinates and reference event.
Parameters
----------
lats : :class:`num.ndarray`
of station location latitude
lons : :class:`num.ndarray`
of station location longitude
names : list
of strings of station names
networks : list
of strings of network names for each station
event : :class:`pyrocko.model.Event`
Results
-------
stations : list
of :class:`pyrocko.model.Station`
"""
stations = []
for lat, lon, name, network in zip(lats, lons, names, networks):
s = model.Station(lat=lat, lon=lon, station=name, network=network)
s.set_event_relative_data(event)
s.set_channels_by_name('E', 'N', 'Z')
if rotate:
p = s.guess_projections_to_rtu(out_channels=('R', 'T', 'Z'))
s.set_channels(p[0][2])
stations.append(s)
return stations
def test_conversions(self):
from pyrocko import model
from pyrocko.fdsn import station, resp, enhanced_sacpz
t = util.str_to_time('2014-01-01 00:00:00')
codes = 'GE', 'EIL', '', 'BHZ'
resp_fpath = common.test_data_file('test1.resp')
stations = [
model.Station(*codes[:3],
lat=29.669901,
lon=34.951199,
elevation=210.0,
depth=0.0)
]
sx_resp = resp.make_stationxml(stations,
resp.iload_filename(resp_fpath))
pr_sx_resp = sx_resp.get_pyrocko_response(codes,
time=t,
fake_input_units='M/S')
pr_evresp = trace.Evalresp(resp_fpath,
nslc_id=codes,
target='vel',
time=t)
sacpz_fpath = common.test_data_file('test1.sacpz')
sx_sacpz = enhanced_sacpz.make_stationxml(
enhanced_sacpz.iload_filename(sacpz_fpath))
pr_sx_sacpz = sx_sacpz.get_pyrocko_response(codes,
time=t,
fake_input_units='M/S')
pr_sacpz = trace.PoleZeroResponse(*pz.read_sac_zpk(sacpz_fpath))
try:
pr_sacpz.zeros.remove(0.0j)
except ValueError:
pr_sacpz.poles.append(0.0j)
sxml_geofon_fpath = common.test_data_file('test1.stationxml')
sx_geofon = station.load_xml(filename=sxml_geofon_fpath)
pr_sx_geofon = sx_geofon.get_pyrocko_response(codes,
time=t,
fake_input_units='M/S')
sxml_iris_fpath = common.test_data_file('test2.stationxml')
sx_iris = station.load_xml(filename=sxml_iris_fpath)
pr_sx_iris = sx_iris.get_pyrocko_response(codes,
time=t,
fake_input_units='M/S')
freqs = num.logspace(num.log10(0.001), num.log10(1.0), num=1000)
tf_ref = pr_evresp.evaluate(freqs)
for pr in [
pr_sx_resp, pr_sx_sacpz, pr_sacpz, pr_sx_geofon, pr_sx_iris
]:
tf = pr.evaluate(freqs)
# plot_tfs(freqs, [tf_ref, tf])
assert cnumeqrel(tf_ref, tf, 0.01)
def snuffle(config):
global _lassie_config
_lassie_config = copy.deepcopy(config)
for _ifc in _lassie_config.image_function_contributions:
_ifc.setup(config)
def load_snuffling(win):
s = LassieSnuffling()
s.config = _lassie_config
s.setup()
win.pile_viewer.viewer.add_snuffling(s, reloaded=True)
win.pile_viewer.viewer.add_blacklist_pattern('*.SMAX.i.*')
for bl in _lassie_config.blacklist:
win.pile_viewer.viewer.add_blacklist_pattern('%s.*' % bl)
detections_path = _lassie_config.get_detections_path()
if os.path.exists(detections_path):
s.detections = detections_to_event_markers(detections_path)
s.add_markers(s.detections)
for _ifc in s.config.image_function_contributions:
if isinstance(_ifc, ifc.ManualPickIFC):
markers_path_extra = _ifc.picks_path
elif isinstance(_ifc, ifc.TemplateMatchingIFC):
markers_path_extra = _ifc.template_markers_path
else:
continue
if os.path.exists(markers_path_extra):
s.add_markers(pmarker.load_markers(markers_path_extra))
else:
logger.warn(
'No such file: %s (referenced in %s, named %s)' %
(markers_path_extra, _ifc.__class__.__name__, _ifc.name))
receivers = config.get_receivers()
stations = set()
lats, lons = geo.points_coords(receivers, system='latlon')
for ir, (lat, lon) in enumerate(zip(lats, lons)):
n, s, l = receivers[ir].codes[:3]
stations.add(
model.Station(lat=lat, lon=lon, network=n, station=s, location=l))
paths = config.expand_path(config.data_paths)
paths.append(config.get_ifm_dir_path())
p = pile.make_pile(paths=paths, fileformat='detect')
meta = {'tabu': True}
for tr in p.iter_traces(trace_selector=lambda x: x.station == 'SMAX'):
if tr.meta:
tr.meta.update(meta)
else:
tr.meta = meta
snuffler.snuffle(p, stations=stations, launch_hook=load_snuffling)
def __init__(self, *args, **kwargs):
unittest.TestCase.__init__(self, *args, **kwargs)
nsamples = 10
ntargets = 30
npatches = 40
sample_rate = 2.
self.times = get_random_uniform(300., 500., ntargets)
self.starttime_min = 0.
self.starttime_max = 15.
starttime_sampling = 0.5
nstarttimes = int(
(self.starttime_max - self.starttime_min) / starttime_sampling) + 1
self.duration_min = 5.
self.duration_max = 10.
duration_sampling = 0.5
self.ndurations = int(
(self.duration_max - self.duration_min) / duration_sampling) + 1
durations = num.linspace(self.duration_min, self.duration_max,
self.ndurations)
starttimes = num.linspace(self.starttime_min, self.starttime_max,
nstarttimes)
lats = num.random.randint(low=-90, high=90, size=ntargets)
lons = num.random.randint(low=-180, high=180, size=ntargets)
stations = [
model.Station(lat=lat, lon=lon) for lat, lon in zip(lats, lons)
]
targets = [
DynamicTarget(store_id='Test_em_2.000_0') for i in range(ntargets)
]
wavemap = WaveformMapping(name='any_P',
stations=stations,
targets=targets)
# TODO needs updating
#self.gfs = ffi.SeismicGFLibrary(
# wavemap=wavemap, component='uperp',
# duration_sampling=duration_sampling,
# starttime_sampling=starttime_sampling,
# starttime_min=self.starttime_min,
# duration_min=self.duration_min)
#self.gfs.setup(
# ntargets, npatches, self.ndurations, nstarttimes,
# nsamples, allocate=True)
tracedata = num.tile(num.arange(nsamples), nstarttimes).reshape(
(nstarttimes, nsamples))
def receivers_to_stations(receivers):
stations = []
for rec in receivers:
stations.append(
model.Station(network=rec.get_network(),
station=rec.get_station(),
location=rec.get_location(),
lat=float(rec.lat),
lon=float(rec.lon),
depth=float(rec.depth)))
return stations
def testIOStations(self):
tempdir = self.make_tempdir()
fn = pjoin(tempdir, 'stations.txt')
ne = model.Channel('NE', azimuth=45., dip=0.)
se = model.Channel('SE', azimuth=135., dip=0.)
stations = [
model.Station('', sta, '', 0., 0., 0., channels=[ne, se])
for sta in ['STA1', 'STA2']]
model.dump_stations(stations, fn)
stations = model.load_stations(fn)
def load_stations(fn):
f = open(fn,'r')
stations = []
for line in f:
data = line.split()
s = model.Station(lat=float(data[1])/100000., lon=float(data[2])/100000., depth=-float(data[3]))
s.my_x = float(data[4])
s.my_y = float(data[5])
stations.append(s)
return stations
def testMissingComponents(self):
ne = model.Channel('NE', azimuth=45., dip=0.)
se = model.Channel('SE', azimuth=135., dip=0.)
station = model.Station('', 'STA', '', 0., 0., 0., channels=[ne, se])
mat = station.projection_to_enu(('NE', 'SE', 'Z'), ('E', 'N', 'U'))[0]
assertOrtho(mat[:, 0], mat[:, 1], mat[:, 2])
n = model.Channel('D', azimuth=0., dip=90.)
station.set_channels([n])
mat = station.projection_to_enu(('N', 'E', 'D'), ('E', 'N', 'U'))[0]
assertOrtho(mat[:, 0], mat[:, 1], mat[:, 2])
def receiver_to_station(rec):
channels = []
for comp in rec.components:
channels.append(kiwi_channels[comp])
sta = model.Station(rec.get_network(),
rec.get_station(),
rec.get_location(),
rec.lat,
rec.lon,
0.0,
depth=rec.depth,
channels=channels)
return sta
def pyrocko_station_from_channels(nsl, channels, inconsistencies='warn'):
pos = lat, lon, elevation, depth = \
channels[0].position_values
if not all(pos == x.position_values for x in channels):
info = '\n'.join(' %s: %s' % (x.code, x.position_values)
for x in channels)
mess = 'encountered inconsistencies in channel ' \
'lat/lon/elevation/depth ' \
'for %s.%s.%s: \n%s' % (nsl + (info,))
if inconsistencies == 'raise':
raise InconsistentChannelLocations(mess)
elif inconsistencies == 'warn':
logger.warn(mess)
logger.warn(' -> using mean values')
apos = num.array([x.position_values for x in channels], dtype=num.float)
mlat, mlon, mele, mdep = num.nansum(apos, axis=0) \
/ num.sum(num.isfinite(apos), axis=0)
groups = {}
for channel in channels:
if channel.code not in groups:
groups[channel.code] = []
groups[channel.code].append(channel)
pchannels = []
for code in sorted(groups.keys()):
data = [(channel.code, value_or_none(channel.azimuth),
value_or_none(channel.dip)) for channel in groups[code]]
azimuth, dip = util.consistency_merge(
data,
message='channel orientation values differ:',
error=inconsistencies)
pchannels.append(model.Channel(code, azimuth=azimuth, dip=dip))
return model.Station(*nsl,
lat=mlat,
lon=mlon,
elevation=mele,
depth=mdep,
channels=pchannels)
def testIOStations(self):
tempdir = tempfile.mkdtemp(prefix='pyrocko-model')
fn = pjoin(tempdir, 'stations.txt')
ne = model.Channel('NE', azimuth=45., dip=0.)
se = model.Channel('SE', azimuth=135., dip=0.)
stations = [
model.Station('', sta, '', 0., 0., 0., channels=[ne, se])
for sta in ['STA1', 'STA2']
]
model.dump_stations(stations, fn)
stations = model.load_stations(fn)
shutil.rmtree(tempdir)
def to_station(self):
net, sta, loc, cha = self.sc_name.nslc()
station = model.Station(
network=net,
station=sta,
location=loc,
lat=self.st_lat,
lon=self.st_long,
elevation=self.elev)
station.add_channel(
model.Channel(
name=cha,
azimuth=self.azim,
dip=self.incid - 90.))
return station
def _get_stations_from_file(self):
fn = pjoin(self._dirpath, 'stations.txt')
f = open(fn, 'r')
stations = []
for line in f:
if line.strip().startswith('#'): continue
toks = line.split()
if len(toks) != 5: continue
net,sta,loc = toks[0].split('.')
lat, lon, elevation, depth = [ float(x) for x in toks[1:] ]
station = model.Station(net, sta, loc, lat, lon, elevation, depth=depth)
stations.append(station)
f.close()
return stations
def gen_stations(nstations=5,
latmin=-90.,
latmax=90.,
lonmin=-180.,
lonmax=180.):
stations = []
for i in range(nstations):
sta = 'S%02i' % i
s = model.Station('',
sta,
'',
lat=randlat(latmin, latmax),
lon=rand(lonmin, lonmax))
stations.append(s)
return stations
def get_center_station(stations, select_closest=False):
''' gravitations center of *stations* list.'''
n = len(stations)
slats = num.empty(n)
slons = num.empty(n)
for i, s in enumerate(stations):
slats[i] = s.lat
slons[i] = s.lon
center_lat, center_lon = ortho.geographic_midpoint(slats, slons)
if select_closest:
center_lats = num.ones(n) * center_lat
center_lons = num.ones(n) * center_lon
dists = ortho.distance_accurate50m_numpy(center_lats, center_lons,
slats, slons)
return stations[num.argmin(dists)]
else:
return model.Station(center_lat, center_lon)
def pyrocko_station_from_channels(nsl, channels, inconsistencies='warn'):
pos = lat, lon, elevation, depth = \
channels[0].position_values
if not all(pos == x.position_values for x in channels):
info = '\n'.join(' %s: %s' % (x.code, x.position_values)
for x in channels)
mess = 'encountered inconsistencies in channel ' \
'lat/lon/elevation/depth ' \
'for %s.%s.%s: \n%s' % (nsl + (info,))
if inconsistencies == 'raise':
raise InconsistentChannelLocations(mess)
elif inconsistencies == 'warn':
logger.warn(mess)
logger.warn(' -> using mean values')
apos = num.array([x.position_values for x in channels], dtype=num.float)
mlat, mlon, mele, mdep = num.nansum(apos, axis=0) / num.sum(
num.isfinite(apos), axis=0)
pchannels = []
for channel in channels:
pchannels.append(
model.Channel(channel.code,
azimuth=value_or_none(channel.azimuth),
dip=value_or_none(channel.dip)))
return model.Station(*nsl,
lat=mlat,
lon=mlon,
elevation=mele,
depth=mdep,
channels=pchannels)
def testProjections(self):
km = 1000.
ev = model.Event(lat=-10, lon=150., depth=0.0)
for azi in num.linspace(0., 360., 37):
lat, lon = orthodrome.ne_to_latlon(ev.lat, ev.lon,
10. * km * math.cos(azi),
10. * km * math.sin(azi))
sta = model.Station(lat=lat, lon=lon)
sta.set_event_relative_data(ev)
sta.set_channels_by_name('BHZ', 'BHE', 'BHN')
r = 1.
t = 1.
traces = [
trace.Trace(channel='BHE',
ydata=num.array(
[math.sin(azi) * r + math.cos(azi) * t])),
trace.Trace(channel='BHN',
ydata=num.array(
[math.cos(azi) * r - math.sin(azi) * t])),
]
for m, in_channels, out_channels in sta.guess_projections_to_rtu():
projected = trace.project(traces, m, in_channels, out_channels)
def g(traces, cha):
for tr in traces:
if tr.channel == cha:
return tr
r = g(projected, 'R')
t = g(projected, 'T')
assert (near(r.ydata[0], 1.0, 0.001))
assert (near(t.ydata[0], 1.0, 0.001))
def to_pyrocko_stations(inventory):
'''
Convert ObsPy inventory to list of Pyrocko traces.
:param inventory:
:py:class:`obspy.Inventory <obspy.core.inventory.inventory.Inventory>`
object
:returns:
list of :py:class:`pyrocko.model.Station` objects or ``None`` if
inventory is ``None``
'''
obspy_inventory = inventory
if obspy_inventory is None:
return None
from pyrocko import model
stations = []
for net in obspy_inventory.networks:
for sta in net.stations:
stations.append(
model.Station(lat=sta.latitude,
lon=sta.longitude,
elevation=sta.elevation,
network=net.code,
station=sta.code,
location='',
channels=[
model.station.Channel(name=cha.code,
azimuth=cha.azimuth,
dip=cha.dip)
for cha in sta.channels
]))
return stations
def doCalc_syn (flag,Config,WaveformDict,FilterMetaData,Gmint,Gmaxt,TTTGridMap,
Folder,Origin, ntimes, switch, ev,arrayfolder, syn_in, parameter):
'''
method for calculating semblance of one station array
'''
Logfile.add ('PROCESS %d %s' % (flag,' Enters Semblance Calculation') )
Logfile.add ('MINT : %f MAXT: %f Traveltime' % (Gmint,Gmaxt))
cfg = ConfigObj (dict=Config)
dimX = cfg.dimX() # ('dimx')
dimY = cfg.dimY() # ('dimy')
winlen = cfg.winlen () # ('winlen')
step = cfg.step() # ('step')
new_frequence = cfg.newFrequency() #('new_frequence')
forerun= cfg.Int('forerun')
duration= cfg.Int('duration')
gridspacing = cfg.Float('gridspacing')
nostat = len (WaveformDict)
traveltimes = {}
recordstarttime = ''
minSampleCount = 999999999
if cfg.UInt ('forerun')>0:
ntimes = int ((cfg.UInt ('forerun') + cfg.UInt ('duration') ) / cfg.UInt ('step') )
else:
ntimes = int ((cfg.UInt ('duration') ) / cfg.UInt ('step') )
nsamp = int (winlen * new_frequence)
nstep = int (step * new_frequence)
from pyrocko import obspy_compat
from pyrocko import orthodrome, model
obspy_compat.plant()
############################################################################
calcStreamMap = WaveformDict
stations = []
py_trs = []
for trace in calcStreamMap.keys():
py_tr = obspy_compat.to_pyrocko_trace(calcStreamMap[trace])
py_trs.append(py_tr)
for il in FilterMetaData:
if str(il) == str(trace):
szo = model.Station(lat=il.lat, lon=il.lon,
station=il.sta, network=il.net,
channels=py_tr.channel,
elevation=il.ele, location=il.loc)
stations.append(szo) #right number of stations?
store_id = syn_in.store()
engine = LocalEngine(store_superdirs=[syn_in.store_superdirs()])
targets = []
for st in stations:
target = Target(
lat=st.lat,
lon=st.lon,
store_id=store_id,
codes=(st.network, st.station, st.location, 'BHZ'),
tmin=-1900,
tmax=3900,
interpolation='multilinear',
quantity=cfg.quantity())
targets.append(target)
if syn_in.nsources() == 1:
if syn_in.use_specific_stf() is True:
stf = syn_in.stf()
exec(stf)
else:
stf = STF()
if syn_in.source() == 'RectangularSource':
source = RectangularSource(
lat=float(syn_in.lat_0()),
lon=float(syn_in.lon_0()),
depth=syn_in.depth_syn_0()*1000.,
strike=syn_in.strike_0(),
dip=syn_in.dip_0(),
rake=syn_in.rake_0(),
width=syn_in.width_0()*1000.,
length=syn_in.length_0()*1000.,
nucleation_x=syn_in.nucleation_x_0(),
slip=syn_in.slip_0(),
nucleation_y=syn_in.nucleation_y_0(),
stf=stf,
time=util.str_to_time(syn_in.time_0()))
if syn_in.source() == 'DCSource':
source = DCSource(
lat=float(syn_in.lat_0()),
lon=float(syn_in.lon_0()),
depth=syn_in.depth_syn_0()*1000.,
strike=syn_in.strike_0(),
dip=syn_in.dip_0(),
rake=syn_in.rake_0(),
stf=stf,
time=util.str_to_time(syn_in.time_0()),
magnitude=syn_in.magnitude_0())
else:
sources = []
for i in range(syn_in.nsources()):
if syn_in.use_specific_stf() is True:
stf = syn_in.stf()
exec(stf)
else:
stf = STF()
if syn_in.source() == 'RectangularSource':
sources.append(RectangularSource(
lat=float(syn_in.lat_1(i)),
lon=float(syn_in.lon_1(i)),
depth=syn_in.depth_syn_1(i)*1000.,
strike=syn_in.strike_1(i),
dip=syn_in.dip_1(i),
rake=syn_in.rake_1(i),
width=syn_in.width_1(i)*1000.,
length=syn_in.length_1(i)*1000.,
nucleation_x=syn_in.nucleation_x_1(i),
slip=syn_in.slip_1(i),
nucleation_y=syn_in.nucleation_y_1(i),
stf=stf,
time=util.str_to_time(syn_in.time_1(i))))
if syn_in.source() == 'DCSource':
sources.append(DCSource(
lat=float(syn_in.lat_1(i)),
lon=float(syn_in.lon_1(i)),
depth=syn_in.depth_1(i)*1000.,
strike=syn_in.strike_1(i),
dip=syn_in.dip_1(i),
rake=syn_in.rake_1(i),
stf=stf,
time=util.str_to_time(syn_in.time_1(i)),
magnitude=syn_in.magnitude_1(i)))
source = CombiSource(subsources=sources)
response = engine.process(source, targets)
synthetic_traces = response.pyrocko_traces()
if cfg.Bool('synthetic_test_add_noise') is True:
from noise_addition import add_noise
trs_orgs = []
calcStreamMapsyn = calcStreamMap.copy()
#from pyrocko import trace
for tracex in calcStreamMapsyn.keys():
for trl in synthetic_traces:
if str(trl.name()[4:12]) == str(tracex[4:]):
tr_org = obspy_compat.to_pyrocko_trace(calcStreamMapsyn[tracex])
tr_org.downsample_to(2.0)
trs_orgs.append(tr_org)
store_id = syn_in.store()
engine = LocalEngine(store_superdirs=[syn_in.store_superdirs()])
synthetic_traces = add_noise(trs_orgs, engine, source.pyrocko_event(),
stations,
store_id, phase_def='P')
trs_org = []
trs_orgs = []
fobj = os.path.join(arrayfolder, 'shift.dat')
xy = num.loadtxt(fobj, usecols=1, delimiter=',')
calcStreamMapsyn = calcStreamMap.copy()
#from pyrocko import trace
for tracex in calcStreamMapsyn.keys():
for trl in synthetic_traces:
if str(trl.name()[4:12])== str(tracex[4:]):
mod = trl
recordstarttime = calcStreamMapsyn[tracex].stats.starttime.timestamp
recordendtime = calcStreamMapsyn[tracex].stats.endtime.timestamp
tr_org = obspy_compat.to_pyrocko_trace(calcStreamMapsyn[tracex])
trs_orgs.append(tr_org)
tr_org_add = mod.chop(recordstarttime, recordendtime, inplace=False)
synthetic_obs_tr = obspy_compat.to_obspy_trace(tr_org_add)
calcStreamMapsyn[tracex] = synthetic_obs_tr
trs_org.append(tr_org_add)
calcStreamMap = calcStreamMapsyn
if cfg.Bool('shift_by_phase_pws') == True:
calcStreamMapshifted= calcStreamMap.copy()
from obspy.core import stream
stream = stream.Stream()
for trace in calcStreamMapshifted.keys():
stream.append(calcStreamMapshifted[trace])
pws_stack = PWS_stack([stream], weight=2, normalize=True)
for tr in pws_stack:
for trace in calcStreamMapshifted.keys():
calcStreamMapshifted[trace]=tr
calcStreamMap = calcStreamMapshifted
if cfg.Bool('shift_by_phase_onset') == True:
pjoin = os.path.join
timeev = util.str_to_time(ev.time)
trs_orgs= []
calcStreamMapshifted= calcStreamMap.copy()
for trace in calcStreamMapshifted.keys():
tr_org = obspy_compat.to_pyrocko_trace(calcStreamMapshifted[trace])
trs_orgs.append(tr_org)
timing = CakeTiming(
phase_selection='first(p|P|PP|P(cmb)P(icb)P(icb)p(cmb)p)-20',
fallback_time=100.)
traces = trs_orgs
event = model.Event(lat=float(ev.lat), lon=float(ev.lon), depth=ev.depth*1000., time=timeev)
directory = arrayfolder
bf = BeamForming(stations, traces, normalize=True)
shifted_traces = bf.process(event=event,
timing=timing,
fn_dump_center=pjoin(directory, 'array_center.pf'),
fn_beam=pjoin(directory, 'beam.mseed'))
i = 0
store_id = syn_in.store()
engine = LocalEngine(store_superdirs=[syn_in.store_superdirs()])
for trace in calcStreamMapshifted.keys():
recordstarttime = calcStreamMapshifted[trace].stats.starttime.timestamp
recordendtime = calcStreamMapshifted[trace].stats.endtime.timestamp
mod = shifted_traces[i]
extracted = mod.chop(recordstarttime, recordendtime, inplace=False)
shifted_obs_tr = obspy_compat.to_obspy_trace(extracted)
calcStreamMapshifted[trace]=shifted_obs_tr
i = i+1
calcStreamMap = calcStreamMapshifted
weight = 0.
if cfg.Bool('weight_by_noise') == True:
from noise_analyser import analyse
pjoin = os.path.join
timeev = util.str_to_time(ev.time)
trs_orgs= []
calcStreamMapshifted= calcStreamMap.copy()
for trace in calcStreamMapshifted.keys():
tr_org = obspy_compat.to_pyrocko_trace(calcStreamMapshifted[trace])
trs_orgs.append(tr_org)
timing = CakeTiming(
phase_selection='first(p|P|PP|P(cmb)P(icb)P(icb)p(cmb)p)-20',
fallback_time=100.)
traces = trs_orgs
event = model.Event(lat=float(ev.lat), lon=float(ev.lon), depth=ev.depth*1000., time=timeev)
directory = arrayfolder
bf = BeamForming(stations, traces, normalize=True)
shifted_traces = bf.process(event=event,
timing=timing,
fn_dump_center=pjoin(directory, 'array_center.pf'),
fn_beam=pjoin(directory, 'beam.mseed'))
i = 0
store_id = syn_in.store()
engine = LocalEngine(store_superdirs=[syn_in.store_superdirs()])
weight = analyse(shifted_traces, engine, event, stations,
100., store_id, nwindows=1,
check_events=True, phase_def='P')
for trace in calcStreamMap.keys():
recordstarttime = calcStreamMap[trace].stats.starttime
d = calcStreamMap[trace].stats.starttime
d = d.timestamp
if calcStreamMap[trace].stats.npts < minSampleCount:
minSampleCount = calcStreamMap[trace].stats.npts
############################################################################
traces = num.ndarray (shape=(len(calcStreamMap), minSampleCount), dtype=float)
traveltime = num.ndarray (shape=(len(calcStreamMap), dimX*dimY), dtype=float)
latv = num.ndarray (dimX*dimY, dtype=float)
lonv = num.ndarray (dimX*dimY, dtype=float)
############################################################################
c=0
streamCounter = 0
for key in calcStreamMap.keys():
streamID = key
c2 = 0
for o in calcStreamMap[key]:
if c2 < minSampleCount:
traces[c][c2] = o
c2 += 1
for key in TTTGridMap.keys():
if streamID == key:
traveltimes[streamCounter] = TTTGridMap[key]
else:
"NEIN", streamID, key
if not streamCounter in traveltimes :
continue #hs : thread crashed before
g = traveltimes[streamCounter]
dimZ = g.dimZ
mint = g.mint
maxt = g.maxt
Latul = g.Latul
Lonul = g.Lonul
Lator = g.Lator
Lonor = g.Lonor
gridElem = g.GridArray
for x in range(dimX):
for y in range(dimY):
elem = gridElem[x, y]
traveltime [c][x * dimY + y] = elem.tt
latv [x * dimY + y] = elem.lat
lonv [x * dimY + y] = elem.lon
#endfor
c += 1
streamCounter += 1
#endfor
############################## CALCULATE PARAMETER FOR SEMBLANCE CALCULATION ##################
nsamp = winlen * new_frequence
nstep = int (step*new_frequence)
migpoints = dimX * dimY
dimZ = 0
new_frequence = cfg.newFrequency () # ['new_frequence']
maxp = int (Config['ncore'])
Logfile.add ('PROCESS %d NTIMES: %d' % (flag,ntimes))
if False :
print ('nostat ',nostat,type(nostat))
print ('nsamp ',nsamp,type(nsamp))
print ('ntimes ',ntimes,type(ntimes))
print ('nstep ',nstep,type(nstep))
print ('dimX ',dimX,type(dimX))
print ('dimY ',dimY,type(dimY))
print ('mint ',Gmint,type(mint))
print ('new_freq ',new_frequence,type(new_frequence))
print ('minSampleCount ',minSampleCount,type(minSampleCount))
print ('latv ',latv,type(latv))
print ('traces',traces,type(traces))
print ('traveltime',traveltime,type(traveltime))
#==================================semblance calculation========================================
t1 = time.time()
traces = traces.reshape (1,nostat*minSampleCount)
traveltime = traveltime.reshape (1,nostat*dimX*dimY)
USE_C_CODE = True
try:
if USE_C_CODE :
import Cm
import CTrig
start_time = time.time()
k = Cm.otest (maxp,nostat,nsamp,ntimes,nstep,dimX,dimY,Gmint,new_frequence,
minSampleCount,latv,lonv,traveltime,traces)
print("--- %s seconds ---" % (time.time() - start_time))
else :
start_time = time.time()
k = otest (maxp,nostat,nsamp,ntimes,nstep,dimX,dimY,Gmint,new_frequence,
minSampleCount,latv,lonv,traveltime,traces) #hs
print("--- %s seconds ---" % (time.time() - start_time))
except:
print("loaded tttgrid has probably wrong dimensions or stations, delete\
ttgrid or exchange")
t2 = time.time()
partSemb = k
partSemb_syn = partSemb.reshape (ntimes,migpoints)
return partSemb_syn
def get_pyrocko_stations(self,
nslcs=None,
nsls=None,
time=None,
timespan=None,
inconsistencies='warn'):
assert inconsistencies in ('raise', 'warn')
if nslcs is not None:
nslcs = set(nslcs)
if nsls is not None:
nsls = set(nsls)
tt = ()
if time is not None:
tt = (time, )
elif timespan is not None:
tt = timespan
pstations = []
for network in self.network_list:
if not network.spans(*tt):
continue
for station in network.station_list:
if not station.spans(*tt):
continue
if station.channel_list:
loc_to_channels = {}
for channel in station.channel_list:
if not channel.spans(*tt):
continue
loc = channel.location_code.strip()
if loc not in loc_to_channels:
loc_to_channels[loc] = []
loc_to_channels[loc].append(channel)
for loc in sorted(loc_to_channels.keys()):
channels = loc_to_channels[loc]
if nslcs is not None:
channels = [
channel for channel in channels
if (network.code, station.code, loc,
channel.code) in nslcs
]
if not channels:
continue
nsl = network.code, station.code, loc
if nsls is not None and nsl not in nsls:
continue
pstations.append(
pyrocko_station_from_channels(
nsl, channels,
inconsistencies=inconsistencies))
else:
pstations.append(
model.Station(network.code,
station.code,
'*',
lat=station.latitude.value,
lon=station.longitude.value,
elevation=value_or_none(
station.elevation),
name=station.description or ''))
return pstations
from pyrocko import orthodrome, model
e = model.Event(lat=10., lon=20.)
s = model.Station(lat=15., lon=120.)
# one possibility:
d = orthodrome.distance_accurate50m(e, s)
print('Distance between e and s is %g km' % (d / 1000.))
# another possibility:
s.set_event_relative_data(e)
print('Distance between e and s is %g km' % (s.dist_m / 1000.))
def call(self):
'''Main work routine of the snuffling.'''
self.cleanup()
olat = 0.
olon = 0.
f = (0., 0., 0.)
deltat = 1./self.fsampling
if self.stf == 'Gauss':
stf = Gauss(self.tau)
elif self.stf == 'Impulse':
stf = Impulse()
viewer = self.get_viewer()
event = viewer.get_active_event()
if event:
event, stations = self.get_active_event_and_stations(missing='warn')
else:
event = model.Event(lat=olat, lon=olon)
stations = []
if not stations:
s = model.Station(lat=olat, lon=olon, station='AFG')
stations = [s]
viewer.add_stations(stations)
source = gf.DCSource(
time=event.time+self.time,
lat=event.lat,
lon=event.lon,
north_shift=self.north_km*km,
east_shift=self.east_km*km,
depth=self.depth_km*km,
magnitude=moment_tensor.moment_to_magnitude(self.moment),
strike=self.strike,
dip=self.dip,
rake=self.rake)
source.regularize()
m = EventMarker(source.pyrocko_event())
self.add_marker(m)
targets = []
mt = moment_tensor.MomentTensor(
strike=source.strike,
dip=source.dip,
rake=source.rake,
moment=self.moment)
traces = []
for station in stations:
xyz = (self.north_km*km, self.east_km*km, self.depth_km*km)
r = num.sqrt(xyz[0]**2 + xyz[1]**2 + xyz[2]**2)
ns = math.ceil(r/self.vs/1.6)*2
outx = num.zeros(int(ns))
outy = num.zeros(int(ns))
outz = num.zeros(int(ns))
nsl = station.nsl()
quantity = self.quantity.split()[0].lower()
add_seismogram(
self.vp*km, self.vs*km, self.density, self.qp, self.qs, xyz, f,
mt.m6(), quantity, deltat, 0., outx, outy, outz,
stf=stf, want_near=self.want_near,
want_intermediate=self.want_intermediate,
want_far=self.want_far)
for channel, out in zip('NEZ', [outx, outy, outz]):
tr = trace.Trace('', station.station, '', channel, deltat=deltat,
tmin=source.time, ydata=out)
traces.append(tr)
self.add_traces(traces)
def call(self):
'''Main work routine of the snuffling.'''
self.cleanup()
# get time range visible in viewer
viewer = self.get_viewer()
event = viewer.get_active_event()
if event:
event, stations = self.get_active_event_and_stations(
missing='warn')
else:
# event = model.Event(lat=self.lat, lon=self.lon)
event = model.Event(lat=0., lon=0.)
stations = []
stations = self.get_stations()
s2c = {}
for traces in self.chopper_selected_traces(fallback=True,
mode='visible'):
for tr in traces:
net, sta, loc, cha = tr.nslc_id
ns = net, sta
if ns not in s2c:
s2c[ns] = set()
s2c[ns].add((loc, cha))
if not stations:
stations = []
for (lat, lon) in [(5., 0.), (-5., 0.)]:
s = model.Station(station='(%g, %g)' % (lat, lon),
lat=lat,
lon=lon)
stations.append(s)
viewer.add_stations(stations)
for s in stations:
ns = s.nsl()[:2]
if ns not in s2c:
s2c[ns] = set()
for cha in 'NEZ':
s2c[ns].add(('', cha))
source = gf.RectangularSource(time=event.time + self.time,
lat=event.lat,
lon=event.lon,
north_shift=self.north_km * km,
east_shift=self.east_km * km,
depth=self.depth_km * km,
magnitude=self.magnitude,
strike=self.strike,
dip=self.dip,
rake=self.rake,
length=self.length,
width=self.width,
nucleation_x=self.nucleation_x,
velocity=self.velocity,
stf=self.get_stf())
source.regularize()
m = EventMarker(source.pyrocko_event())
self.add_marker(m)
targets = []
if self.store_id == '<not loaded yet>':
self.fail('Select a GF Store first')
for station in stations:
nsl = station.nsl()
if nsl[:2] not in s2c:
continue
for loc, cha in s2c[nsl[:2]]:
target = gf.Target(codes=(station.network, station.station,
loc + '-syn', cha),
quantity='displacement',
lat=station.lat,
lon=station.lon,
depth=station.depth,
store_id=self.store_id,
optimization='enable',
interpolation='nearest_neighbor')
_, bazi = source.azibazi_to(target)
if cha.endswith('T'):
dip = 0.
azi = bazi + 270.
elif cha.endswith('R'):
dip = 0.
azi = bazi + 180.
elif cha.endswith('1'):
dip = 0.
azi = 0.
elif cha.endswith('2'):
dip = 0.
azi = 90.
else:
dip = None
azi = None
target.azimuth = azi
target.dip = dip
targets.append(target)
req = gf.Request(sources=[source], targets=targets)
req.regularize()
try:
resp = self.get_engine().process(req)
except (gf.meta.OutOfBounds, gf.store_ext.StoreExtError) as e:
self.fail(e)
traces = resp.pyrocko_traces()
if self.waveform_type.startswith('Velocity'):
for tr in traces:
tr.set_ydata(num.diff(tr.ydata) / tr.deltat)
elif self.waveform_type.startswith('Acceleration'):
for tr in traces:
tr.set_ydata(num.diff(num.diff(tr.ydata)) / tr.deltat**2)
if self.waveform_type.endswith('[nm]') or \
self.waveform_type.endswith('[nm/s]') or \
self.waveform_type.endswith('[nm/s^2]'):
for tr in traces:
tr.set_ydata(tr.ydata * 1e9)
self.add_traces(traces)
