def test_aa_seq_header_regex(self):
options = Args()
options.ancestralfasta = get_file('ancestor.fa')
options.header = 'ANCESTOR_?_FA'
options.chromosome = '2'
options.single_chromosome = False
aaSeq = aa_seq(options)
self.__verify_sequence__(aaSeq)
def test_aa_seq_header_regex(self):
options = Args()
options.ancestralfasta = get_file('ancestor.fa')
options.header = 'ANCESTOR_?_FA'
options.chromosome = '2'
options.single_chromosome = False
aaSeq = aa_seq(options)
self.__verify_sequence__(aaSeq)
def test_aa_seq_single_chromosome(self):
options = Args()
options.ancestralfasta = get_file('ancestor.fa')
options.single_chromosome = True
aaSeq = aa_seq(options)
self.__verify_sequence__(aaSeq)
def test_aa_seq_single_chromosome(self):
options = Args()
options.ancestralfasta = get_file('ancestor.fa')
options.single_chromosome = True
aaSeq = aa_seq(options)
self.__verify_sequence__(aaSeq)
