def test_roundtrip_rna(self):
with io.StringIO() as fh:
_rna_to_embl(_embl_to_rna(self.single_rna_fp), fh)
obs = fh.getvalue()
with open(self.single_rna_fp) as fh:
exp = fh.read()
self.assertEqual(obs, exp)
def test_roundtrip_rna(self):
with io.StringIO() as fh:
_rna_to_embl(_embl_to_rna(self.single_rna_fp), fh)
obs = fh.getvalue()
with open(self.single_rna_fp) as fh:
exp = fh.read()
self.assertEqual(obs, exp)
def test_rna_to_embl(self):
with io.StringIO() as fh:
seq, md, imd, constructor = self.single_rna
obj = constructor(seq, md, interval_metadata=imd, lowercase=True)
_rna_to_embl(obj, fh)
obs = fh.getvalue()
with open(self.single_rna_fp) as fh:
exp = fh.read()
self.assertEqual(obs, exp)
def test_rna_to_embl(self):
with io.StringIO() as fh:
seq, md, imd, constructor = self.single_rna
obj = constructor(seq, md, interval_metadata=imd, lowercase=True)
_rna_to_embl(obj, fh)
obs = fh.getvalue()
with open(self.single_rna_fp) as fh:
exp = fh.read()
self.assertEqual(obs, exp)
def test_rna_to_embl_flp(self):
"""Test writing feature level products"""
with io.StringIO() as fh:
seq, md, imd, constructor = self.feature_level
obj = constructor(seq, md, interval_metadata=imd, lowercase=True)
_rna_to_embl(obj, fh)
obs = fh.getvalue()
with open(self.feature_level_fp) as fh:
exp = fh.read()
self.assertEqual(obs, exp)
def test_rna_to_embl_flp(self):
"""Test writing feature level products"""
with io.StringIO() as fh:
seq, md, imd, constructor = self.feature_level
obj = constructor(seq, md, interval_metadata=imd, lowercase=True)
_rna_to_embl(obj, fh)
obs = fh.getvalue()
with open(self.feature_level_fp) as fh:
exp = fh.read()
self.assertEqual(obs, exp)