Python Genotype.set_format Beispiele

Beispiel #1

Datei: genotype_tests.py Projekt: jeldred/svtools

 def test_get_format(self):
     g = Genotype(self.variant, '0/1')
     g.set_format('INACTIVE', 10)
     self.assertEqual(g.get_format('INACTIVE'), 10)

Beispiel #2

Datei: genotype_tests.py Projekt: jeldred/svtools

 def test_get_gt_string(self):
     g = Genotype(self.variant, '0/1')
     g.set_format('INACTIVE', 10)
     self.assertEqual(g.get_gt_string(), '0/1:.:10')

Beispiel #3

 def test_get_gt_string(self):
     g = Genotype(self.variant, ['0/1'])
     g.set_format('INACTIVE', 10)
     self.assertEqual(g.get_gt_string(), '0/1:.:10')

Beispiel #4

Datei: genotype_tests.py Projekt: jeldred/svtools

 def test_set_format(self):
     g = Genotype(self.variant, '0/1')
     self.assertFalse('INACTIVE' in self.variant.active_formats)
     g.set_format('INACTIVE', 10)
     self.assertEqual(g.format['INACTIVE'], 10)
     self.assertTrue('INACTIVE' in self.variant.active_formats)

Beispiel #5

 def test_get_format(self):
     g = Genotype(self.variant, ['0/1'])
     g.set_format('INACTIVE', 10)
     self.assertEqual(g.get_format('INACTIVE'), 10)

Beispiel #6

 def test_set_format(self):
     g = Genotype(self.variant, ['0/1'])
     self.assertFalse('INACTIVE' in self.variant.format_dict)
     g.set_format('INACTIVE', 10)
     self.assertEqual(g.get_format('INACTIVE'), 10)
     self.assertTrue('INACTIVE' in self.variant.format_dict)

Beispiel #7

 def test_equal(self):
     g1 = Genotype(self.variant, ['0/1'])
     g1.set_format('INACTIVE', 10)
     g2 = Genotype(self.variant, ['0/1'])
     g2.set_format('INACTIVE', 10)
     self.assertEqual(g1, g2)

Beispiel #8

Datei: genotype_tests.py Projekt: MMesbahU/svtools

 def test_set_format(self):
     g = Genotype(self.variant, ['0/1'])
     self.assertFalse('INACTIVE' in self.variant.format_dict)
     g.set_format('INACTIVE', 10)
     self.assertEqual(g.get_format('INACTIVE'), 10)
     self.assertTrue('INACTIVE' in self.variant.format_dict)

Beispiel #9

Datei: genotype_tests.py Projekt: MMesbahU/svtools

 def test_equal(self):
     g1 = Genotype(self.variant, ['0/1'])
     g1.set_format('INACTIVE', 10)
     g2 = Genotype(self.variant, ['0/1'])
     g2.set_format('INACTIVE', 10)
     self.assertEqual(g1, g2)