def test_get_format(self): g = Genotype(self.variant, '0/1') g.set_format('INACTIVE', 10) self.assertEqual(g.get_format('INACTIVE'), 10)
def test_get_gt_string(self): g = Genotype(self.variant, '0/1') g.set_format('INACTIVE', 10) self.assertEqual(g.get_gt_string(), '0/1:.:10')
def test_get_gt_string(self): g = Genotype(self.variant, ['0/1']) g.set_format('INACTIVE', 10) self.assertEqual(g.get_gt_string(), '0/1:.:10')
def test_set_format(self): g = Genotype(self.variant, '0/1') self.assertFalse('INACTIVE' in self.variant.active_formats) g.set_format('INACTIVE', 10) self.assertEqual(g.format['INACTIVE'], 10) self.assertTrue('INACTIVE' in self.variant.active_formats)
def test_get_format(self): g = Genotype(self.variant, ['0/1']) g.set_format('INACTIVE', 10) self.assertEqual(g.get_format('INACTIVE'), 10)
def test_set_format(self): g = Genotype(self.variant, ['0/1']) self.assertFalse('INACTIVE' in self.variant.format_dict) g.set_format('INACTIVE', 10) self.assertEqual(g.get_format('INACTIVE'), 10) self.assertTrue('INACTIVE' in self.variant.format_dict)
def test_equal(self): g1 = Genotype(self.variant, ['0/1']) g1.set_format('INACTIVE', 10) g2 = Genotype(self.variant, ['0/1']) g2.set_format('INACTIVE', 10) self.assertEqual(g1, g2)