def write_ice_entry(ice_client, ice_id1, ice_id2, typ, write_seq, group_names): '''Write a composite ICE entry (part in plasmid, or plasmid in strain).''' comp1 = ice_client.get_ice_entry(ice_id1) comp2 = ice_client.get_ice_entry(ice_id2) name = comp1.get_metadata()['name'] + \ ' (' + comp2.get_metadata()['name'] + ')' product = ICEEntry(typ=typ) product.set_values({'name': name[:127], 'shortDescription': name}) taxonomy = comp1.get_parameter('Taxonomy') if taxonomy: product.set_parameter('Taxonomy', taxonomy) ice_client.set_ice_entry(product) ice_client.add_link(product.get_ice_id(), comp1.get_ice_id()) ice_client.add_link(product.get_ice_id(), comp2.get_ice_id()) if write_seq: product.set_dna(dna_utils.concat( [comp1.get_dna(), comp2.get_dna()])) ice_client.set_ice_entry(product) if group_names: groups = ice_client.get_groups() for group_name in group_names: ice_client.add_permission(product.get_ice_id(), groups[group_name]) return product, comp1, comp2
def test_set_values(self): '''Tests set_values method.''' ice_entry1 = ICEEntry(typ='PLASMID') ice_entry1.set_values({'creator': 'God', 'name': 'Test'}) self.assertEqual(ice_entry1.get_metadata()['type'], 'PLASMID') self.assertEqual(ice_entry1.get_metadata()['creator'], 'God') self.assertEqual(ice_entry1.get_metadata()['name'], 'Test') ice_entry2 = ICEEntry(metadata={'type': 'PLASMID'}) ice_entry2.set_values({'creator': 'God', 'name': 'Test'}) self.assertEqual(ice_entry2.get_metadata()['type'], 'PLASMID') self.assertEqual(ice_entry2.get_metadata()['creator'], 'God') self.assertEqual(ice_entry2.get_metadata()['name'], 'Test')
def test_set_values(self): '''Tests set_values method.''' ice_entry1 = ICEEntry(typ='PLASMID') ice_entry1.set_values({'creator': 'God', 'name': 'Test'}) self.assertEqual(ice_entry1.get_metadata()['type'], 'PLASMID') self.assertEqual(ice_entry1.get_metadata()['creator'], 'God') self.assertEqual(ice_entry1.get_metadata()['name'], 'Test') ice_entry2 = ICEEntry(metadata={'type': 'PLASMID'}) ice_entry2.set_values({'creator': 'God', 'name': 'Test'}) self.assertEqual(ice_entry2.get_metadata()['type'], 'PLASMID') self.assertEqual(ice_entry2.get_metadata()['creator'], 'God') self.assertEqual(ice_entry2.get_metadata()['name'], 'Test')