def write_ice_entry(ice_client, ice_id1, ice_id2, typ, write_seq, group_names):
'''Write a composite ICE entry (part in plasmid, or plasmid in strain).'''
comp1 = ice_client.get_ice_entry(ice_id1)
comp2 = ice_client.get_ice_entry(ice_id2)
name = comp1.get_metadata()['name'] + \
' (' + comp2.get_metadata()['name'] + ')'
product = ICEEntry(typ=typ)
product.set_values({'name': name[:127], 'shortDescription': name})
taxonomy = comp1.get_parameter('Taxonomy')
if taxonomy:
product.set_parameter('Taxonomy', taxonomy)
ice_client.set_ice_entry(product)
ice_client.add_link(product.get_ice_id(), comp1.get_ice_id())
ice_client.add_link(product.get_ice_id(), comp2.get_ice_id())
if write_seq:
product.set_dna(dna_utils.concat(
[comp1.get_dna(), comp2.get_dna()]))
ice_client.set_ice_entry(product)
if group_names:
groups = ice_client.get_groups()
for group_name in group_names:
ice_client.add_permission(product.get_ice_id(),
groups[group_name])
return product, comp1, comp2
def test_set_values(self):
'''Tests set_values method.'''
ice_entry1 = ICEEntry(typ='PLASMID')
ice_entry1.set_values({'creator': 'God', 'name': 'Test'})
self.assertEqual(ice_entry1.get_metadata()['type'], 'PLASMID')
self.assertEqual(ice_entry1.get_metadata()['creator'], 'God')
self.assertEqual(ice_entry1.get_metadata()['name'], 'Test')
ice_entry2 = ICEEntry(metadata={'type': 'PLASMID'})
ice_entry2.set_values({'creator': 'God', 'name': 'Test'})
self.assertEqual(ice_entry2.get_metadata()['type'], 'PLASMID')
self.assertEqual(ice_entry2.get_metadata()['creator'], 'God')
self.assertEqual(ice_entry2.get_metadata()['name'], 'Test')
def test_set_values(self):
'''Tests set_values method.'''
ice_entry1 = ICEEntry(typ='PLASMID')
ice_entry1.set_values({'creator': 'God', 'name': 'Test'})
self.assertEqual(ice_entry1.get_metadata()['type'], 'PLASMID')
self.assertEqual(ice_entry1.get_metadata()['creator'], 'God')
self.assertEqual(ice_entry1.get_metadata()['name'], 'Test')
ice_entry2 = ICEEntry(metadata={'type': 'PLASMID'})
ice_entry2.set_values({'creator': 'God', 'name': 'Test'})
self.assertEqual(ice_entry2.get_metadata()['type'], 'PLASMID')
self.assertEqual(ice_entry2.get_metadata()['creator'], 'God')
self.assertEqual(ice_entry2.get_metadata()['name'], 'Test')
