def setup(pipe_config, supplied_mon_coords=None):
"""
Initialises the pipeline run.
"""
if not supplied_mon_coords:
supplied_mon_coords = []
# Setup logfile before we do anything else
log_dir = pipe_config.logging.log_dir
setup_logging(log_dir, debug=pipe_config.logging.debug,
use_colorlog=pipe_config.logging.colorlog)
job_dir = pipe_config.DEFAULT.job_directory
if not os.access(job_dir, os.X_OK):
msg = "can't access job folder %s" % job_dir
logger.error(msg)
raise IOError(msg)
logger.info("Job dir: %s", job_dir)
db_config = get_database_config(pipe_config.database, apply=True)
dump_database_backup(db_config, job_dir)
job_config = load_job_config(pipe_config)
dump_configs_to_logdir(log_dir, job_config, pipe_config)
sync_rejectreasons(tkp.db.Database().Session())
job_config, dataset_id = initialise_dataset(job_config, supplied_mon_coords)
return job_dir, job_config, dataset_id
def setup(pipe_config, supplied_mon_coords=None):
"""
Initialises the pipeline run.
"""
if not supplied_mon_coords:
supplied_mon_coords = []
# Setup logfile before we do anything else
log_dir = pipe_config.logging.log_dir
setup_logging(log_dir,
debug=pipe_config.logging.debug,
use_colorlog=pipe_config.logging.colorlog)
job_dir = pipe_config.DEFAULT.job_directory
if not os.access(job_dir, os.X_OK):
msg = "can't access job folder %s" % job_dir
logger.error(msg)
raise IOError(msg)
logger.info("Job dir: %s", job_dir)
db_config = get_database_config(pipe_config.database, apply=True)
dump_database_backup(db_config, job_dir)
job_config = load_job_config(pipe_config)
dump_configs_to_logdir(log_dir, job_config, pipe_config)
sync_rejectreasons(tkp.db.Database().Session())
job_config, dataset_id = initialise_dataset(job_config,
supplied_mon_coords)
return job_dir, job_config, dataset_id
def test_rejectreasons_sync(self):
"""
Delete a rejectreason, then re-sync and double check the counts match.
"""
reason = self.session.query(Rejectreason).all()[-1]
print "Deleting reason id", reason.id
self.session.delete(reason)
self.assertNotEqual(
self.session.query(Rejectreason).count(),
len(dbqual.reject_reasons))
dbqual.sync_rejectreasons(self.session)
self.session.flush()
self.assertEqual(
self.session.query(Rejectreason).count(),
len(dbqual.reject_reasons))
def test_rejectreasons_sync(self):
"""
Delete a rejectreason, then re-sync and double check the counts match.
"""
reason = self.session.query(Rejectreason).all()[-1]
print "Deleting reason id", reason.id
self.session.delete(reason)
self.assertNotEqual(
self.session.query(Rejectreason).count(),
len(dbqual.reject_reasons))
dbqual.sync_rejectreasons(self.session)
self.session.flush()
self.assertEqual(
self.session.query(Rejectreason).count(),
len(dbqual.reject_reasons))