def test_libraries(self):
kastore_lib = {"version": ".".join(map(str, _tskit.get_kastore_version()))}
env = provenance.get_environment()
assert {"kastore": kastore_lib, "tskit": {"version": tskit.__version__}} == env[
"libraries"
]
env = provenance.get_environment(include_tskit=False)
assert {"kastore": kastore_lib} == env["libraries"]
extra_libs = {"abc": [], "xyz": {"one": 1}}
env = provenance.get_environment(include_tskit=False, extra_libs=extra_libs)
libs = {"kastore": kastore_lib}
libs.update(extra_libs)
assert libs == env["libraries"]
def test_python(self):
env = provenance.get_environment()
python = {
"implementation": platform.python_implementation(),
"version": platform.python_version(),
}
self.assertEqual(env["python"], python)
def test_simplify(self):
ts = msprime.simulate(5, random_seed=1)
ts = ts.simplify()
prov = json.loads(ts.provenance(1).record)
tskit.validate_provenance(prov)
assert prov["parameters"]["command"] == "simplify"
assert prov["environment"] == provenance.get_environment(include_tskit=False)
assert prov["software"] == {"name": "tskit", "version": tskit.__version__}
def test_os(self):
env = provenance.get_environment()
os = {
"system": platform.system(),
"node": platform.node(),
"release": platform.release(),
"version": platform.version(),
"machine": platform.machine()
}
self.assertEqual(env["os"], os)
