def test_libraries(self): kastore_lib = {"version": ".".join(map(str, _tskit.get_kastore_version()))} env = provenance.get_environment() assert {"kastore": kastore_lib, "tskit": {"version": tskit.__version__}} == env[ "libraries" ] env = provenance.get_environment(include_tskit=False) assert {"kastore": kastore_lib} == env["libraries"] extra_libs = {"abc": [], "xyz": {"one": 1}} env = provenance.get_environment(include_tskit=False, extra_libs=extra_libs) libs = {"kastore": kastore_lib} libs.update(extra_libs) assert libs == env["libraries"]
def test_python(self): env = provenance.get_environment() python = { "implementation": platform.python_implementation(), "version": platform.python_version(), } self.assertEqual(env["python"], python)
def test_simplify(self): ts = msprime.simulate(5, random_seed=1) ts = ts.simplify() prov = json.loads(ts.provenance(1).record) tskit.validate_provenance(prov) assert prov["parameters"]["command"] == "simplify" assert prov["environment"] == provenance.get_environment(include_tskit=False) assert prov["software"] == {"name": "tskit", "version": tskit.__version__}
def test_os(self): env = provenance.get_environment() os = { "system": platform.system(), "node": platform.node(), "release": platform.release(), "version": platform.version(), "machine": platform.machine() } self.assertEqual(env["os"], os)