def model5D_Model_B(morseset=0,specfile="networks/5D_Model_B.txt",paramfile="5D_Model_B_FCParams.txt",resultsfile='results_5D_B.txt',findallmatches=1):
def setPattern():
f=open('patterns.txt','w')
for s1 in permutations(['Y1 max','Y2 max','Z max']):
patternstr1='X max, ' + ', '.join(s1) + ', Y3 max, X min, '
for s2 in permutations(['Y1 min','Y2 min','Z min']):
patternstr2=patternstr1 + ', '.join(s2) + ', Y3 min, X max \n'
f.write(patternstr2)
f.close()
setPattern()
useDSGRN.patternSearch(morseset,specfile,paramfile,resultsfile,findallmatches=findallmatches)
def patternSearch(morseset=0,
specfile="networks/5D_Malaria_20hr.txt",
paramfile="5D_Malaria_2015_FCParams_MorseGraph565.txt",
resultsfile="results_5Dmalaria_20hr_morsegraph565.txt",
findallmatches=0,
printparam=1):
setPattern()
useDSGRN.patternSearch(morseset,
specfile,
paramfile,
resultsfile,
printparam=printparam,
findallmatches=findallmatches)
def model5D_Model_B(morseset=0,
specfile="networks/5D_Model_B.txt",
paramfile="5D_Model_B_FCParams.txt",
resultsfile='results_5D_B.txt',
findallmatches=1):
def setPattern():
f = open('patterns.txt', 'w')
for s1 in permutations(['Y1 max', 'Y2 max', 'Z max']):
patternstr1 = 'X max, ' + ', '.join(s1) + ', Y3 max, X min, '
for s2 in permutations(['Y1 min', 'Y2 min', 'Z min']):
patternstr2 = patternstr1 + ', '.join(
s2) + ', Y3 min, X max \n'
f.write(patternstr2)
f.close()
setPattern()
useDSGRN.patternSearch(morseset,
specfile,
paramfile,
resultsfile,
findallmatches=findallmatches)
def patternSearch(morseset=0,specfile="/home/bcummins/DSGRN/networks/5D_2015_09_11.txt",paramfile="/share/data/bcummins/5D_2015_09_11_FCParams_MorseGraph565.txt",resultsfile="/share/data/bcummins/results_5Dmalaria_20hr_morsegraph565.txt",findallmatches=0,printparam=1):
setPattern()
useDSGRN.patternSearch(morseset,specfile,paramfile,resultsfile,printparam=printparam,findallmatches=findallmatches)
def patternSearch(morseset=0,specfile="networks/5D_Malaria_20hr.txt",paramfile="5D_Malaria_2015_FCParams_MorseGraph565.txt",resultsfile="results_5Dmalaria_20hr_morsegraph565.txt",findallmatches=0,printparam=1):
setPattern()
useDSGRN.patternSearch(morseset,specfile,paramfile,resultsfile,printparam=printparam,findallmatches=findallmatches)