def model5D_Model_B(morseset=0,specfile="networks/5D_Model_B.txt",paramfile="5D_Model_B_FCParams.txt",resultsfile='results_5D_B.txt',findallmatches=1): def setPattern(): f=open('patterns.txt','w') for s1 in permutations(['Y1 max','Y2 max','Z max']): patternstr1='X max, ' + ', '.join(s1) + ', Y3 max, X min, ' for s2 in permutations(['Y1 min','Y2 min','Z min']): patternstr2=patternstr1 + ', '.join(s2) + ', Y3 min, X max \n' f.write(patternstr2) f.close() setPattern() useDSGRN.patternSearch(morseset,specfile,paramfile,resultsfile,findallmatches=findallmatches)
def patternSearch(morseset=0, specfile="networks/5D_Malaria_20hr.txt", paramfile="5D_Malaria_2015_FCParams_MorseGraph565.txt", resultsfile="results_5Dmalaria_20hr_morsegraph565.txt", findallmatches=0, printparam=1): setPattern() useDSGRN.patternSearch(morseset, specfile, paramfile, resultsfile, printparam=printparam, findallmatches=findallmatches)
def model5D_Model_B(morseset=0, specfile="networks/5D_Model_B.txt", paramfile="5D_Model_B_FCParams.txt", resultsfile='results_5D_B.txt', findallmatches=1): def setPattern(): f = open('patterns.txt', 'w') for s1 in permutations(['Y1 max', 'Y2 max', 'Z max']): patternstr1 = 'X max, ' + ', '.join(s1) + ', Y3 max, X min, ' for s2 in permutations(['Y1 min', 'Y2 min', 'Z min']): patternstr2 = patternstr1 + ', '.join( s2) + ', Y3 min, X max \n' f.write(patternstr2) f.close() setPattern() useDSGRN.patternSearch(morseset, specfile, paramfile, resultsfile, findallmatches=findallmatches)
def patternSearch(morseset=0,specfile="/home/bcummins/DSGRN/networks/5D_2015_09_11.txt",paramfile="/share/data/bcummins/5D_2015_09_11_FCParams_MorseGraph565.txt",resultsfile="/share/data/bcummins/results_5Dmalaria_20hr_morsegraph565.txt",findallmatches=0,printparam=1): setPattern() useDSGRN.patternSearch(morseset,specfile,paramfile,resultsfile,printparam=printparam,findallmatches=findallmatches)
def patternSearch(morseset=0,specfile="networks/5D_Malaria_20hr.txt",paramfile="5D_Malaria_2015_FCParams_MorseGraph565.txt",resultsfile="results_5Dmalaria_20hr_morsegraph565.txt",findallmatches=0,printparam=1): setPattern() useDSGRN.patternSearch(morseset,specfile,paramfile,resultsfile,printparam=printparam,findallmatches=findallmatches)