def test_order_does_not_matter(self):
v1 = vr("2L", 819219, "C", "A", 819219)
v2 = vr("2L", 819235, "C", "A", 819235)
transcript_1 = veffects.run_workflow(self.gene, self.feature_table,
[v1, v2])
transcript_2 = veffects.run_workflow(self.gene, self.feature_table,
[v2, v1])
self.assertEqual(transcript_1.seq_changed_translated,
transcript_2.seq_changed_translated)
def test_variant_set_two(self):
self.transcript = veffects.run_workflow(self.gene, self.feature_table,
self.variants_two)
output_two = "MANAPNPKQYTMSHVAE*"
self.assertEqual(self.transcript.seq_changed_translated, output_two)
def test_variant_set_one(self):
self.transcript = veffects.run_workflow(self.gene, self.feature_table,
self.variants_one)
output_one = "MGDAPPRQYIKYSRNTAE*"
self.assertEqual(self.transcript.seq_changed_translated, output_one)
def test_variant_set_five(self):
self.transcript = veffects.run_workflow(self.gene, self.feature_table,
self.variants_five)
output_five = "MVLNGIDSGDMQLICEACHLMLALEEMVRSDVWKQGVLDSFLL" +\
"ELPHHFLNQRDVEG*"
self.assertEqual(self.transcript.seq_changed_translated, output_five)
def test_variant_set_four(self):
self.transcript = veffects.run_workflow(self.gene, self.feature_table,
self.variants_four)
output_four = "MVHKGIDYGDMQLICEACHLMLPLGMTRKEMVQAFGVWNKGVLY" +\
"SYLIEIPHDFLNQRDVEG*"
self.assertEqual(self.transcript.seq_changed_translated, output_four)
def test_variant_set_three(self):
self.transcript = veffects.run_workflow(self.gene, self.feature_table,
self.variants_three)
output_three = "MVHNGIDYGDMQLICEACHLMLALGMTRKEMVQEFDVWNKGVF" +\
"GFVPDRDPARFFNQRDVEG*"
self.assertEqual(self.transcript.seq_changed_translated, output_three)
def test_variant_set_two(self):
self.transcript = veffects.run_workflow(self.gene, self.feature_table,
self.variants_two)
output_two = "MVHNGIDYGDMQLICEACHPDAGAGHDTEGNGTGVRRVEQGRIG" +\
"FVPDRDPARFSQPTRR*GI"
self.assertEqual(self.transcript.seq_changed_translated, output_two)
def test_variant_set_one(self):
self.transcript = veffects.run_workflow(self.gene, self.feature_table,
self.variants_one)
output_one = "MVHNGIDYGDMQLICEACHLMLSLGMTLKEMVQEFDV*GVLDS" +\
"FLIEIPHDFLNQRDVEG*"
self.assertEqual(self.transcript.seq_changed_translated, output_one)