def test_order_does_not_matter(self): v1 = vr("2L", 819219, "C", "A", 819219) v2 = vr("2L", 819235, "C", "A", 819235) transcript_1 = veffects.run_workflow(self.gene, self.feature_table, [v1, v2]) transcript_2 = veffects.run_workflow(self.gene, self.feature_table, [v2, v1]) self.assertEqual(transcript_1.seq_changed_translated, transcript_2.seq_changed_translated)
def test_variant_set_two(self): self.transcript = veffects.run_workflow(self.gene, self.feature_table, self.variants_two) output_two = "MANAPNPKQYTMSHVAE*" self.assertEqual(self.transcript.seq_changed_translated, output_two)
def test_variant_set_one(self): self.transcript = veffects.run_workflow(self.gene, self.feature_table, self.variants_one) output_one = "MGDAPPRQYIKYSRNTAE*" self.assertEqual(self.transcript.seq_changed_translated, output_one)
def test_variant_set_five(self): self.transcript = veffects.run_workflow(self.gene, self.feature_table, self.variants_five) output_five = "MVLNGIDSGDMQLICEACHLMLALEEMVRSDVWKQGVLDSFLL" +\ "ELPHHFLNQRDVEG*" self.assertEqual(self.transcript.seq_changed_translated, output_five)
def test_variant_set_four(self): self.transcript = veffects.run_workflow(self.gene, self.feature_table, self.variants_four) output_four = "MVHKGIDYGDMQLICEACHLMLPLGMTRKEMVQAFGVWNKGVLY" +\ "SYLIEIPHDFLNQRDVEG*" self.assertEqual(self.transcript.seq_changed_translated, output_four)
def test_variant_set_three(self): self.transcript = veffects.run_workflow(self.gene, self.feature_table, self.variants_three) output_three = "MVHNGIDYGDMQLICEACHLMLALGMTRKEMVQEFDVWNKGVF" +\ "GFVPDRDPARFFNQRDVEG*" self.assertEqual(self.transcript.seq_changed_translated, output_three)
def test_variant_set_two(self): self.transcript = veffects.run_workflow(self.gene, self.feature_table, self.variants_two) output_two = "MVHNGIDYGDMQLICEACHPDAGAGHDTEGNGTGVRRVEQGRIG" +\ "FVPDRDPARFSQPTRR*GI" self.assertEqual(self.transcript.seq_changed_translated, output_two)
def test_variant_set_one(self): self.transcript = veffects.run_workflow(self.gene, self.feature_table, self.variants_one) output_one = "MVHNGIDYGDMQLICEACHLMLSLGMTLKEMVQEFDV*GVLDS" +\ "FLIEIPHDFLNQRDVEG*" self.assertEqual(self.transcript.seq_changed_translated, output_one)