def plot_ecg(filenumber, base_filename="mit_bih/", title="MIT-BIH Arrhythmia Database"):
record = wfdb.rdsamp(base_filename+str(filenumber), sampto=3000, smoothframes=True)
annotation = wfdb.rdann(base_filename+str(filenumber), 'atr', sampto=3000)
#Annotation attributes: record_name, extension, sample (indices), symbol (classes), subtype, chan, num, aux_note, fs, label_store, description, custom_labels, contained_labels
wfdb.plotrec(record, annotation = annotation, title="Record "+str(filenumber)+title, figsize = (10,4), ecggrids = 'all',plotannsym=True)
def import_record (filenames,Nb_samples):
records_name =[]
records = []
if database_name == 'PAF':
for i in range(len(filenames)):
records_name.append(filenames[i][4:-4])
record_name = filenames[i][4:-4]
record = wfdb.rdsamp(database_name+'/'+record_name, sampto=Nb_samples)
#annotation = wfdb.rdann('PAF/n01', 'atr', sampto=3000)
wfdb.plotrec(record,
title='Record'+ record_name +'from '+database_name,
timeunits = 'seconds', figsize = (10,4), ecggrids = 'all')
records.append(record)
return records
def main():
ecgrecord = wfdb.rdsamp('ecg_data/100', sampfrom=0, sampto=5000)
annotation = wfdb.rdann('ecg_data/100', 'atr', sampto=5000)
#print(len(ecgrecord.p_signals))
print(ecgrecord.p_signals[0])
print(ecgrecord.p_signals[0][0])
print(ecgrecord.p_signals[0][1])
wfdb.plotrec(ecgrecord,
annotation=annotation,
title='Record 100 from MIT-BIH Arrhythmia Database',
timeunits='seconds',
figsize=(10, 4),
ecggrids='all')
j += 1
a.writerows(data)
file.close()
ekgFileName = ''
if len(sys.argv) > 1:
ekgFileName = str(sys.argv[1])
else:
ekgFileName = '100'
print('Wyswietlenie obu sygnalow...')
record = wfdb.rdsamp(ekgFileName, sampto=3000)
annotation = wfdb.rdann(ekgFileName, 'atr', sampto=3000)
wfdb.plotrec(
record,
annotation=annotation,
title='Część pliku: ' + ekgFileName,
)
record = wfdb.rdsamp(ekgFileName)
annotation = wfdb.rdann(ekgFileName, 'atr')
if ekgFileName == '100':
drainName1 = 'MLII'
drainName2 = 'V5'
elif ekgFileName == '113' or ekgFileName == '231':
drainName1 = 'MLII'
drainName2 = 'V1'
else:
drainName1 = 'indefinite'
drainName2 = 'indefinite'
@author: lifeng.miao
"""
import wfdb
import numpy as np
import scipy
import matplotlib.pyplot as plt
from IPython.display import display
#create record object
ecgrecord = wfdb.rdsamp('sampledata/test01_00s', sampfrom=800, channels = [1,3])
#plot record with annotation
record = wfdb.rdsamp('sampledata/100', sampto = 3000)
annotation = wfdb.rdann('sampledata/100', 'atr', sampto = 3000)
wfdb.plotrec(record, annotation = annotation, title='Record 100 from MIT-BIH Arrhythmia Database', timeunits = 'seconds', figsize = (10,4), ecggrids = 'all')
wfdb.plotann(annotation, title = None, timeunits = 'samples', returnfig = False)
plt.plot(record.p_signals[:,0])
plt.plot(annotation.annsamp)
display(record.__dict__)
wfdb.showanncodes()
#list all database and download certain database
dblist = wfdb.getdblist()
wfdb.dldatabase('ahadb', u'D:\\Python\\ECG_Machine_Learning\\wfdb-python\\data')
wfdb.dldatabase('mitdb', u'D:\\Python\\ECG_Machine_Learning\\wfdb-python\\data\\MIT_BIH')
wfdb.dldatabasefiles('cebsdb', u'D:\\Python\\ECG_Machine_Learning\\wfdb-python\\data',
['b006.hea', 'b006.dat', 'b006.atr'])
#read signal
sig, fields = wfdb.srdsamp('sampledata/test01_00s', sampfrom=800, channels = [1,3])
sig, fields = wfdb.srdsamp('data/b006', sampfrom=0, channels = [0,1,2,3])
def plot_ecg(signal, hea, text):
wfdb.plotrec(signal, title=text)
display(signal.__dict__)
display(hea.__dict__)
#the example from https://github.com/MIT-LCP/wfdb-python/blob/master/demo.ipynb.
#you need to install the package wfdb-python from pycharm.
import wfdb
import numpy as np
import os
from IPython.display import display
#read our own ecg data
record = wfdb.rdsamp('../ptbdb/patient002/s0015lre')
wfdb.plotrec(record, title='ecg data of patient 001')
display(record.__dict__)
print('test complete')
import wfdb
rec = wfdb.rdsamp(
'/media/reetu/MYDISC/physionet.org/physiobank/database/mimic2wdb/matched/s00052/3238451_0003'
)
wfdb.plotrec(rec)
sig, fld = wfdb.srdsamp(
'/media/reetu/MYDISC/physionet.org/physiobank/database/mimic2wdb/matched/s00052/3238451_0003'
)