def plot_ecg(filenumber, base_filename="mit_bih/", title="MIT-BIH Arrhythmia Database"):

    record = wfdb.rdsamp(base_filename+str(filenumber), sampto=3000, smoothframes=True)
    annotation = wfdb.rdann(base_filename+str(filenumber), 'atr', sampto=3000)
    #Annotation attributes: record_name, extension, sample (indices), symbol (classes), subtype, chan, num, aux_note, fs, label_store, description, custom_labels, contained_labels

    wfdb.plotrec(record, annotation = annotation, title="Record "+str(filenumber)+title, figsize = (10,4), ecggrids = 'all',plotannsym=True)
Example #2
0
def import_record (filenames,Nb_samples):
    
    records_name =[]
    records = []
    if database_name == 'PAF':
        for i in range(len(filenames)):
            records_name.append(filenames[i][4:-4])
            
            record_name = filenames[i][4:-4]
            record = wfdb.rdsamp(database_name+'/'+record_name, sampto=Nb_samples)
            #annotation = wfdb.rdann('PAF/n01', 'atr', sampto=3000)
            wfdb.plotrec(record,
                     title='Record'+ record_name +'from '+database_name,
                     timeunits = 'seconds', figsize = (10,4), ecggrids = 'all')
            records.append(record)
    return records
Example #3
0
def main():
    ecgrecord = wfdb.rdsamp('ecg_data/100', sampfrom=0, sampto=5000)
    annotation = wfdb.rdann('ecg_data/100', 'atr', sampto=5000)

    #print(len(ecgrecord.p_signals))

    print(ecgrecord.p_signals[0])
    print(ecgrecord.p_signals[0][0])
    print(ecgrecord.p_signals[0][1])

    wfdb.plotrec(ecgrecord,
                 annotation=annotation,
                 title='Record 100 from MIT-BIH Arrhythmia Database',
                 timeunits='seconds',
                 figsize=(10, 4),
                 ecggrids='all')
Example #4
0
                j += 1
        a.writerows(data)
        file.close()


ekgFileName = ''
if len(sys.argv) > 1:
    ekgFileName = str(sys.argv[1])
else:
    ekgFileName = '100'
print('Wyswietlenie obu sygnalow...')
record = wfdb.rdsamp(ekgFileName, sampto=3000)
annotation = wfdb.rdann(ekgFileName, 'atr', sampto=3000)
wfdb.plotrec(
    record,
    annotation=annotation,
    title='Część pliku: ' + ekgFileName,
)
record = wfdb.rdsamp(ekgFileName)
annotation = wfdb.rdann(ekgFileName, 'atr')

if ekgFileName == '100':
    drainName1 = 'MLII'
    drainName2 = 'V5'
elif ekgFileName == '113' or ekgFileName == '231':
    drainName1 = 'MLII'
    drainName2 = 'V1'
else:
    drainName1 = 'indefinite'
    drainName2 = 'indefinite'
Example #5
0
@author: lifeng.miao
"""

import wfdb
import numpy as np
import scipy
import matplotlib.pyplot as plt
from IPython.display import display
#create record object
ecgrecord = wfdb.rdsamp('sampledata/test01_00s', sampfrom=800, channels = [1,3])

#plot record with annotation
record = wfdb.rdsamp('sampledata/100', sampto = 3000)
annotation = wfdb.rdann('sampledata/100', 'atr', sampto = 3000)
wfdb.plotrec(record, annotation = annotation, title='Record 100 from MIT-BIH Arrhythmia Database', timeunits = 'seconds', figsize = (10,4), ecggrids = 'all')
wfdb.plotann(annotation, title = None, timeunits = 'samples', returnfig = False)
plt.plot(record.p_signals[:,0])
plt.plot(annotation.annsamp)
display(record.__dict__)
wfdb.showanncodes()
#list all database and download certain database
dblist = wfdb.getdblist()
wfdb.dldatabase('ahadb', u'D:\\Python\\ECG_Machine_Learning\\wfdb-python\\data')
wfdb.dldatabase('mitdb', u'D:\\Python\\ECG_Machine_Learning\\wfdb-python\\data\\MIT_BIH')
wfdb.dldatabasefiles('cebsdb', u'D:\\Python\\ECG_Machine_Learning\\wfdb-python\\data', 
                     ['b006.hea', 'b006.dat', 'b006.atr'])

#read signal
sig, fields = wfdb.srdsamp('sampledata/test01_00s', sampfrom=800, channels = [1,3])
sig, fields = wfdb.srdsamp('data/b006', sampfrom=0, channels = [0,1,2,3])
Example #6
0
def plot_ecg(signal, hea, text):
    wfdb.plotrec(signal, title=text)
    display(signal.__dict__)
    display(hea.__dict__)
Example #7
0
#the example from https://github.com/MIT-LCP/wfdb-python/blob/master/demo.ipynb.
#you need to install the package wfdb-python from pycharm.

import wfdb
import numpy as np
import os
from IPython.display import display

#read our own ecg data
record = wfdb.rdsamp('../ptbdb/patient002/s0015lre')
wfdb.plotrec(record, title='ecg data of patient 001')
display(record.__dict__)

print('test complete')
import wfdb
rec = wfdb.rdsamp(
    '/media/reetu/MYDISC/physionet.org/physiobank/database/mimic2wdb/matched/s00052/3238451_0003'
)
wfdb.plotrec(rec)
sig, fld = wfdb.srdsamp(
    '/media/reetu/MYDISC/physionet.org/physiobank/database/mimic2wdb/matched/s00052/3238451_0003'
)