args.extend(['--lads', '\"' + str(ladsDict) + '\"'])
else:
args.extend(['--lads', '\"' + str(ladsDict) + '\"'])
executeProcess(interpreter, 'CompareSearches.py', args, outBase)
infoMap = DataFile.getDBInfo(options.database, key='infoMap')
if progDict[options.mainprogname] == 'LADS':
getPairStats = True
mainProgFields = ['PScore', 'Num Ambig Edges']
else:
getPairStats = False
mainProgFields = [infoMap[progDict[options.mainprogname]]['Score']]
if options.denovoscript:
stats = Analytics.getCompStats(getOutputName(outBase, 'CompareSearches.py', '.tdv'), unitTestName, progDict, infoMap, paramsDict)
elif options.mainprogname:
unitTestName = options.mainprogname
if not options.comp:
stats = Analytics.getCompStats(getOutputName(outBase, 'CompareSearches.py', '.tdv'), options.mainprogname, progDict, infoMap, paramsDict, getPairStats=getPairStats, mainProgFields=mainProgFields)
else:
stats = Analytics.getCompStats(options.comp, options.mainprogname, progDict, infoMap, paramsDict, getPairStats=getPairStats, mainProgFields=mainProgFields)
outFile = open(options.output, 'w')
outFile.write('\nOverall Comparison Statistics\n')
writeCategoryInfo(stats, outFile, ['composite'], name='Composite')
outFile.write('\nTrue Pairs\n')
if getPairStats:
for pairConfigName in paramsDict['Pair Configurations']:
writeCategoryInfo(stats, outFile, ['truepairs', pairConfigName], name='%s True Pairs' % (pairConfigName,))
