from FF_Tasks import * if __name__ == '__main__': '''iterate the list of orders''' import lst_sub import sys filename = sys.argv[1] jobs = lst_sub.getLst(filename) tasks = FF_Tasks(jobs, total_subsets = 5, task_fn = filename, ff='-0.8.ff', output_dir='0.8.ff') tasks.displayJobs() # tasks.copy_to_work() # dc_cmds = tasks.getDecoysCmds(script='dc.sh') # tasks.multi_process(dc_cmds) # tasks.shuffle_join() # tasks.subMcc() # the mcc_sub.pbs file needs modifying in this step for different total_subsets # tasks.subInitCluster() # tasks.subInitRejoinDecoy() tasks.subSecondRejoin_multi_pro() # tasks.retrieve()
from FF_Tasks import * if __name__ == '__main__': '''iterate the list of orders''' import lst_sub import sys filename = sys.argv[1] jobs = lst_sub.getLst(filename) tasks = FF_Tasks(jobs, total_subsets = 5, task_fn = filename, ff='-0.8.ff', output_dir='0.8.ff') tasks.displayJobs() tasks.copy_to_work() # dc_cmds = tasks.getDecoysCmds(script='dc.sh') # tasks.multi_process(dc_cmds) # tasks.shuffle_join() # tasks.subMcc() # the mcc_sub.pbs file needs modifying in this step for different total_subsets # tasks.subInitCluster() # tasks.subInitRejoinDecoy() tasks.subInitRejoin_multi_pro() # tasks.retrieve()
import sys,os import time import multi_process from FF_Tasks import * if __name__ == '__main__': '''iterate the list of orders''' import lst_sub import sys filename = sys.argv[1] jobs = lst_sub.getLst(filename) tasks = FF_Tasks(jobs, total_subsets = 5, task_fn = filename, ff='-0.8.ff', output_dir='0.8.ff') tasks.displayJobs() tasks.copy_to_work() dc_cmds = tasks.getDecoysCmds(script='dc.sh') tasks.multi_process(dc_cmds)
from FF_Tasks import * if __name__ == '__main__': '''iterate the list of orders''' import lst_sub import sys filename = sys.argv[1] jobs = lst_sub.getLst(filename) tasks = FF_Tasks(jobs, total_subsets = 5, task_fn = filename, ff='-0.8.ff', output_dir='0.8.ff') tasks.displayJobs() # tasks.copy_to_work() # dc_cmds = tasks.getDecoysCmds(script='dc.sh') # tasks.multi_process(dc_cmds) # tasks.shuffle_join() # tasks.subMcc() # the mcc_sub.pbs file needs modifying in this step for different total_subsets # tasks.subSecondMcc() # tasks.subInitRejoinDecoy() tasks.subSecondCluster() # tasks.retrieve()
from FF_Tasks import * if __name__ == '__main__': '''iterate the list of orders''' import lst_sub import sys filename = sys.argv[1] jobs = lst_sub.getLst(filename) tasks = FF_Tasks(jobs, total_subsets = 5, task_fn = filename, ff='-0.8.ff', output_dir='0.8.ff') tasks.displayJobs() # tasks.copy_to_work() # dc_cmds = tasks.getDecoysCmds(script='dc.sh') # tasks.multi_process(dc_cmds) # tasks.shuffle_join() # tasks.subMcc() # the mcc_sub.pbs file needs modifying in this step for different total_subsets tasks.subSecondMcc() # tasks.subInitRejoinDecoy() # tasks.subSecondCluster() # tasks.retrieve()
from FF_Tasks import * if __name__ == '__main__': '''iterate the list of orders''' import lst_sub import sys filename = sys.argv[1] jobs = lst_sub.getLst(filename) tasks = FF_Tasks(jobs, total_subsets = 5, task_fn = filename, ff='-0.8.ff', output_dir='0.8.ff') tasks.displayJobs() # tasks.copy_to_work() # dc_cmds = tasks.getDecoysCmds(script='dc.sh') # tasks.multi_process(dc_cmds) # tasks.shuffle_join() # tasks.subMcc() # the mcc_sub.pbs file needs modifying in this step for different total_subsets # tasks.subInitCluster() # tasks.subInitRejoinDecoy() tasks.runInitRejoin_multi_pro() # tasks.retrieve()
from FF_Tasks import * if __name__ == '__main__': '''iterate the list of orders''' import lst_sub import sys filename = sys.argv[1] jobs = lst_sub.getLst(filename) tasks = FF_Tasks(jobs, total_subsets = 5) tasks.displayJobs() tasks.subInitRejoinDecoy() # tasks.retrieve()
from FF_Tasks import * if __name__ == '__main__': '''iterate the list of orders''' import lst_sub import sys filename = sys.argv[1] jobs = lst_sub.getLst(filename) tasks = FF_Tasks(jobs, total_subsets = 5) tasks.displayJobs() tasks.copy_to_work() # dc_cmds = tasks.getDecoysCmds(script='dc.sh') # tasks.multi_process(dc_cmds) # tasks.shuffle_join() # tasks.subMcc() # the mcc_sub.pbs file needs modifying in this step for different total_subsets # tasks.subInitCluster() # tasks.retrieve()
from FF_Tasks import * if __name__ == '__main__': '''iterate the list of orders''' import lst_sub import sys filename = sys.argv[1] jobs = lst_sub.getLst(filename) tasks = FF_Tasks(jobs, total_subsets = 5, task_fn = filename, ff='-0.8.ff', output_dir='0.8.ff') tasks.displayJobs() # tasks.copy_to_work() # dc_cmds = tasks.getDecoysCmds(script='dc.sh') # tasks.multi_process(dc_cmds) # tasks.shuffle_join() # tasks.subMcc() # the mcc_sub.pbs file needs modifying in this step for different total_subsets tasks.subInitCluster() # tasks.subInitRejoinDecoy() # tasks.retrieve()
from FF_Tasks import * if __name__ == '__main__': '''iterate the list of orders''' import lst_sub import sys filename = sys.argv[1] jobs = lst_sub.getLst(filename) tasks = FF_Tasks(jobs, total_subsets = 5, task_fn = filename, ff='-0.8.ff', output_dir='0.8.ff') tasks.displayJobs() # tasks.copy_to_work() # dc_cmds = tasks.getDecoysCmds(script='dc.sh') # tasks.multi_process(dc_cmds) # tasks.shuffle_join() tasks.subMcc() # the mcc_sub.pbs file needs modifying in this step for different total_subsets # tasks.subInitCluster() # tasks.retrieve()