예제 #1
0
from FF_Tasks import *

if __name__ == '__main__':
    '''iterate the list of orders'''
    import lst_sub
    import sys
    filename = sys.argv[1]
    jobs = lst_sub.getLst(filename)
    tasks = FF_Tasks(jobs, total_subsets = 5, task_fn = filename, ff='-0.8.ff', output_dir='0.8.ff')
    tasks.displayJobs()
    # tasks.copy_to_work()
    # dc_cmds = tasks.getDecoysCmds(script='dc.sh')
    # tasks.multi_process(dc_cmds)
    # tasks.shuffle_join()
    # tasks.subMcc()      # the mcc_sub.pbs file needs modifying in this step for different total_subsets
    # tasks.subInitCluster()
    # tasks.subInitRejoinDecoy()
    tasks.subSecondRejoin_multi_pro()
    # tasks.retrieve()
예제 #2
0
from FF_Tasks import *


if __name__ == '__main__':
    '''iterate the list of orders'''
    import lst_sub
    import sys
    filename = sys.argv[1]
    jobs = lst_sub.getLst(filename)
    tasks = FF_Tasks(jobs, total_subsets = 5, task_fn = filename, ff='-0.8.ff', output_dir='0.8.ff')
    tasks.displayJobs()
    tasks.copy_to_work()
    # dc_cmds = tasks.getDecoysCmds(script='dc.sh')
    # tasks.multi_process(dc_cmds)
    # tasks.shuffle_join()
    # tasks.subMcc()      # the mcc_sub.pbs file needs modifying in this step for different total_subsets
    # tasks.subInitCluster()
    # tasks.subInitRejoinDecoy()
    tasks.subInitRejoin_multi_pro()

    # tasks.retrieve()
예제 #3
0
파일: DC_tasks.py 프로젝트: EricTing/script 
import sys,os
import time
import multi_process
from FF_Tasks import *



if __name__ == '__main__':
    '''iterate the list of orders'''
    import lst_sub
    import sys
    filename = sys.argv[1]
    jobs = lst_sub.getLst(filename)
    tasks = FF_Tasks(jobs, total_subsets = 5, task_fn = filename, ff='-0.8.ff', output_dir='0.8.ff')
    tasks.displayJobs()
    tasks.copy_to_work()
    dc_cmds = tasks.getDecoysCmds(script='dc.sh')
    tasks.multi_process(dc_cmds)
예제 #4
0
from FF_Tasks import *

if __name__ == '__main__':
    '''iterate the list of orders'''
    import lst_sub
    import sys
    filename = sys.argv[1]
    jobs = lst_sub.getLst(filename)
    tasks = FF_Tasks(jobs, total_subsets = 5, task_fn = filename, ff='-0.8.ff', output_dir='0.8.ff')
    tasks.displayJobs()
    # tasks.copy_to_work()
    # dc_cmds = tasks.getDecoysCmds(script='dc.sh')
    # tasks.multi_process(dc_cmds)
    # tasks.shuffle_join()
    # tasks.subMcc()      # the mcc_sub.pbs file needs modifying in this step for different total_subsets
    # tasks.subSecondMcc()
    # tasks.subInitRejoinDecoy()
    tasks.subSecondCluster()

    # tasks.retrieve()
예제 #5
0
from FF_Tasks import *

if __name__ == '__main__':
    '''iterate the list of orders'''
    import lst_sub
    import sys
    filename = sys.argv[1]
    jobs = lst_sub.getLst(filename)
    tasks = FF_Tasks(jobs, total_subsets = 5, task_fn = filename, ff='-0.8.ff', output_dir='0.8.ff')
    tasks.displayJobs()
    # tasks.copy_to_work()
    # dc_cmds = tasks.getDecoysCmds(script='dc.sh')
    # tasks.multi_process(dc_cmds)
    # tasks.shuffle_join()
    # tasks.subMcc()      # the mcc_sub.pbs file needs modifying in this step for different total_subsets
    tasks.subSecondMcc()
    # tasks.subInitRejoinDecoy()
    # tasks.subSecondCluster()

    # tasks.retrieve()
예제 #6
0
from FF_Tasks import *

if __name__ == '__main__':
    '''iterate the list of orders'''
    import lst_sub
    import sys
    filename = sys.argv[1]
    jobs = lst_sub.getLst(filename)
    tasks = FF_Tasks(jobs, total_subsets = 5, task_fn = filename, ff='-0.8.ff', output_dir='0.8.ff')
    tasks.displayJobs()
    # tasks.copy_to_work()
    # dc_cmds = tasks.getDecoysCmds(script='dc.sh')
    # tasks.multi_process(dc_cmds)
    # tasks.shuffle_join()
    # tasks.subMcc()      # the mcc_sub.pbs file needs modifying in this step for different total_subsets
    # tasks.subInitCluster()
    # tasks.subInitRejoinDecoy()
    tasks.runInitRejoin_multi_pro()
    # tasks.retrieve()
예제 #7
0
from FF_Tasks import *

if __name__ == '__main__':
    '''iterate the list of orders'''
    import lst_sub
    import sys
    filename = sys.argv[1]
    jobs = lst_sub.getLst(filename)
    tasks = FF_Tasks(jobs, total_subsets = 5)
    tasks.displayJobs()
    tasks.subInitRejoinDecoy()

    # tasks.retrieve()
예제 #8
0
from FF_Tasks import *

if __name__ == '__main__':
    '''iterate the list of orders'''
    import lst_sub
    import sys
    filename = sys.argv[1]
    jobs = lst_sub.getLst(filename)
    tasks = FF_Tasks(jobs, total_subsets = 5)
    tasks.displayJobs()
    tasks.copy_to_work()
    # dc_cmds = tasks.getDecoysCmds(script='dc.sh')
    # tasks.multi_process(dc_cmds)
    # tasks.shuffle_join()
    # tasks.subMcc()      # the mcc_sub.pbs file needs modifying in this step for different total_subsets
    # tasks.subInitCluster()

    # tasks.retrieve()
예제 #9
0
from FF_Tasks import *

if __name__ == '__main__':
    '''iterate the list of orders'''
    import lst_sub
    import sys
    filename = sys.argv[1]
    jobs = lst_sub.getLst(filename)
    tasks = FF_Tasks(jobs, total_subsets = 5, task_fn = filename, ff='-0.8.ff', output_dir='0.8.ff')
    tasks.displayJobs()
    # tasks.copy_to_work()
    # dc_cmds = tasks.getDecoysCmds(script='dc.sh')
    # tasks.multi_process(dc_cmds)
    # tasks.shuffle_join()
    # tasks.subMcc()      # the mcc_sub.pbs file needs modifying in this step for different total_subsets
    tasks.subInitCluster()
    # tasks.subInitRejoinDecoy()

    # tasks.retrieve()
예제 #10
0
파일: MCC.py 프로젝트: EricTing/script 
from FF_Tasks import *

if __name__ == '__main__':
    '''iterate the list of orders'''
    import lst_sub
    import sys
    filename = sys.argv[1]
    jobs = lst_sub.getLst(filename)
    tasks = FF_Tasks(jobs, total_subsets = 5, task_fn = filename, ff='-0.8.ff', output_dir='0.8.ff')
    tasks.displayJobs()
    # tasks.copy_to_work()
    # dc_cmds = tasks.getDecoysCmds(script='dc.sh')
    # tasks.multi_process(dc_cmds)
    # tasks.shuffle_join()
    tasks.subMcc()      # the mcc_sub.pbs file needs modifying in this step for different total_subsets
    # tasks.subInitCluster()

    # tasks.retrieve()