data[key+'_wavelength']=[] data[key+'_reflectance']=[] ########################################################### #comment these next 2 lines out if you are not using bias correction data_bias[key+'_wavelength']=[] data_bias[key+'_reflectance']=[] data_corr[key+'_reflectance']=[] #obtain Infragold calibrated data data[key+'_wavelength'], data[key+'_reflectance'] = IR_analysis.calibrate_data(file, IG_filenames[index]) ########################################################### #comment these next lines out if you are not using bias correction #obtain Infragold calibrated bias files data_bias[key+'_wavelength'], data_bias[key+'_reflectance'] = IR_analysis.calibrate_data(bias_filenames[index], IG_filenames[index]) #bias correction data_corr[key+'_reflectance'] = IR_analysis.bias_correct(data[key+'_reflectance'], data_bias[key+'_reflectance']) print 'finished reading file: ', key print 'plotting...' ######################################################### #plot IR spectra #Four Windows comparison #example of a single spectrum plot #(wavelength, reflectance, xrange, title, save file, smoothing integer) ########################################################### #replace "data_corr" with "data" if not use bias correction IR_plot.plot_IR_spectrum(np.array(data['FW203_orange_01_wavelength']), np.array(data_corr['FW203_orange_01_reflectance']), [1.6,3.6], 'FW203: cashbox (no smoothing)', 'output/FW203_cashbox.png', 1)
