print 'finished reading file: ', key
print '(removed bad scans)'
IR_analysis.write_file(key, data[key+'_wavelength'], data[key+'_reflectance'])
#PASA cashbox txt (2015, and later, current format)
#same analysis as PASA-Lite
for index, file in enumerate(sample_filenames_PASA_cashbox):
#data stored in dictionary
#define key based on file name
key=file.split('samples/',1)[-1]
key=key.rstrip('.txt')
#store wavelength and reflectance data in key
data[key+'_wavelength']=[]
data[key+'_reflectance']=[]
#obtain Infragold calibrated data
data[key+'_wavelength'], data[key+'_reflectance'] = IR_analysis.calibrate_data_PASA_lite(file, IG_filenames_PASA_cashbox[index])
print 'finished reading file: ', key
IR_analysis.write_file(key, data[key+'_wavelength'], data[key+'_reflectance'])
#PASA-Lite .txt files (2015 and later, current format)
#same analysis file as PASA cashbox
for index, file in enumerate(sample_filenames_PASA_lite):
#data stored in dictionary
#define key based on file name
key=file.split('samples/',1)[-1]
key=key.rstrip('.txt')
#store wavelength and reflectance data in key
data[key+'_wavelength']=[]
data[key+'_reflectance']=[]
#obtain Infragold calibrated data
data[key+'_wavelength'], data[key+'_reflectance'] = IR_analysis.calibrate_data_PASA_lite(file, IG_filenames_PASA_lite[index])
