def getCodingGenomicCoordinates(species):
global cds_location_db
global cds_genomic_db
import IdentifyAltIsoforms
cds_location_db = IdentifyAltIsoforms.importCDScoordinates(species)
#print cds_location_db['ENST00000436739'];sys.exit()
cds_genomic_db={}
option = 'exon'
filename = 'AltDatabase/ensembl/'+species+'/'+species+'_Ensembl_transcript-annotations.txt'
importEnsExonStructureData(filename,option)
filename = 'AltDatabase/ucsc/'+species+'/'+species+'_UCSC_transcript_structure_mrna.txt'
try: importEnsExonStructureData(filename,option)
except Exception: None ### Not available for all species - needs to be built prior to transcript model creation
def getCodingGenomicCoordinates(species):
global cds_location_db
global cds_genomic_db
import IdentifyAltIsoforms
cds_location_db = IdentifyAltIsoforms.importCDScoordinates(species)
#print cds_location_db['ENST00000436739'];sys.exit()
cds_genomic_db={}
option = 'exon'
filename = 'AltDatabase/ensembl/'+species+'/'+species+'_Ensembl_transcript-annotations.txt'
importEnsExonStructureData(filename,option)
filename = 'AltDatabase/ucsc/'+species+'/'+species+'_UCSC_transcript_structure_mrna.txt'
try: importEnsExonStructureData(filename,option)
except Exception: None ### Not available for all species - needs to be built prior to transcript model creation
