def getCodingGenomicCoordinates(species): global cds_location_db global cds_genomic_db import IdentifyAltIsoforms cds_location_db = IdentifyAltIsoforms.importCDScoordinates(species) #print cds_location_db['ENST00000436739'];sys.exit() cds_genomic_db={} option = 'exon' filename = 'AltDatabase/ensembl/'+species+'/'+species+'_Ensembl_transcript-annotations.txt' importEnsExonStructureData(filename,option) filename = 'AltDatabase/ucsc/'+species+'/'+species+'_UCSC_transcript_structure_mrna.txt' try: importEnsExonStructureData(filename,option) except Exception: None ### Not available for all species - needs to be built prior to transcript model creation