def test_bootstrap_consensus(self):
calculator = DistanceCalculator("blosum62")
constructor = DistanceTreeConstructor(calculator, "nj")
tree = Consensus.bootstrap_consensus(self.msa, 100, constructor,
Consensus.majority_consensus)
self.assertTrue(isinstance(tree, BaseTree.Tree))
Phylo.write(tree, os.path.join(temp_dir, "bootstrap_consensus.tre"),
"newick")
def test_bootstrap_consensus(self):
calculator = DistanceCalculator('blosum62')
constructor = DistanceTreeConstructor(calculator, 'nj')
tree = Consensus.bootstrap_consensus(self.msa, 100, constructor,
Consensus.majority_consensus)
self.assertTrue(isinstance(tree, BaseTree.Tree))
Phylo.write(tree, './TreeConstruction/bootstrap_consensus.tre',
'newick')
def test_bootstrap_consensus(self):
calculator = DistanceCalculator('blosum62')
constructor = DistanceTreeConstructor(calculator, 'nj')
tree = Consensus.bootstrap_consensus(self.msa, 100, constructor, Consensus.majority_consensus)
self.assertTrue(isinstance(tree, BaseTree.Tree))
Phylo.write(tree, os.path.join(temp_dir, 'bootstrap_consensus.tre'), 'newick')
def test_bootstrap_consensus(self):
calculator = DistanceCalculator("blosum62")
constructor = DistanceTreeConstructor(calculator, "nj")
tree = Consensus.bootstrap_consensus(self.msa, 100, constructor, Consensus.majority_consensus)
self.assertTrue(isinstance(tree, BaseTree.Tree))
Phylo.write(tree, "./TreeConstruction/bootstrap_consensus.tre", "newick")
