def test_bootstrap_consensus(self): calculator = DistanceCalculator("blosum62") constructor = DistanceTreeConstructor(calculator, "nj") tree = Consensus.bootstrap_consensus(self.msa, 100, constructor, Consensus.majority_consensus) self.assertTrue(isinstance(tree, BaseTree.Tree)) Phylo.write(tree, os.path.join(temp_dir, "bootstrap_consensus.tre"), "newick")
def test_bootstrap_consensus(self): calculator = DistanceCalculator('blosum62') constructor = DistanceTreeConstructor(calculator, 'nj') tree = Consensus.bootstrap_consensus(self.msa, 100, constructor, Consensus.majority_consensus) self.assertTrue(isinstance(tree, BaseTree.Tree)) Phylo.write(tree, './TreeConstruction/bootstrap_consensus.tre', 'newick')
def test_bootstrap_consensus(self): calculator = DistanceCalculator('blosum62') constructor = DistanceTreeConstructor(calculator, 'nj') tree = Consensus.bootstrap_consensus(self.msa, 100, constructor, Consensus.majority_consensus) self.assertTrue(isinstance(tree, BaseTree.Tree)) Phylo.write(tree, os.path.join(temp_dir, 'bootstrap_consensus.tre'), 'newick')
def test_bootstrap_consensus(self): calculator = DistanceCalculator("blosum62") constructor = DistanceTreeConstructor(calculator, "nj") tree = Consensus.bootstrap_consensus(self.msa, 100, constructor, Consensus.majority_consensus) self.assertTrue(isinstance(tree, BaseTree.Tree)) Phylo.write(tree, "./TreeConstruction/bootstrap_consensus.tre", "newick")