def test_construct_cgi_ecitmatch(self):
citation = {
"journal_title": "proc natl acad sci u s a",
"year": "1991",
"volume": "88",
"first_page": "3248",
"author_name": "mann bj",
"key": "citation_1",
}
variables = Entrez._update_ecitmatch_variables({
"db": "pubmed",
"bdata": [citation]
})
with patch_urlopen() as patched:
Entrez.ecitmatch(**variables)
result_url = get_patched_get_url(patched, self)
parsed = urlparse(result_url)
query = parse_qs(parsed.query)
self.assertEqual(get_base_url(parsed), URL_HEAD + "ecitmatch.cgi")
query.pop("bdata") # TODO
self.assertDictEqual(
query,
{
"retmode": ["xml"],
"db": [variables["db"]],
**QUERY_DEFAULTS
},
)
def test_construct_cgi_ecitmatch(self):
citation = {
"journal_title": "proc natl acad sci u s a",
"year": "1991", "volume": "88", "first_page": "3248",
"author_name": "mann bj", "key": "citation_1"
}
cgi = 'http://eutils.ncbi.nlm.nih.gov/entrez/eutils/ecitmatch.cgi'
variables = Entrez._update_ecitmatch_variables({'db': 'pubmed',
'bdata': [citation]})
post = False
params = Entrez._construct_params(variables)
options = Entrez._encode_options(ecitmatch=True, params=params)
result_url = Entrez._construct_cgi(cgi, post=post, options=options)
self.assertIn("retmode=xml", result_url)