def test_construct_cgi_ecitmatch(self): citation = { "journal_title": "proc natl acad sci u s a", "year": "1991", "volume": "88", "first_page": "3248", "author_name": "mann bj", "key": "citation_1", } variables = Entrez._update_ecitmatch_variables({ "db": "pubmed", "bdata": [citation] }) with patch_urlopen() as patched: Entrez.ecitmatch(**variables) result_url = get_patched_get_url(patched, self) parsed = urlparse(result_url) query = parse_qs(parsed.query) self.assertEqual(get_base_url(parsed), URL_HEAD + "ecitmatch.cgi") query.pop("bdata") # TODO self.assertDictEqual( query, { "retmode": ["xml"], "db": [variables["db"]], **QUERY_DEFAULTS }, )
def test_construct_cgi_ecitmatch(self): citation = { "journal_title": "proc natl acad sci u s a", "year": "1991", "volume": "88", "first_page": "3248", "author_name": "mann bj", "key": "citation_1" } cgi = 'http://eutils.ncbi.nlm.nih.gov/entrez/eutils/ecitmatch.cgi' variables = Entrez._update_ecitmatch_variables({'db': 'pubmed', 'bdata': [citation]}) post = False params = Entrez._construct_params(variables) options = Entrez._encode_options(ecitmatch=True, params=params) result_url = Entrez._construct_cgi(cgi, post=post, options=options) self.assertIn("retmode=xml", result_url)