Ejemplos de PipelineGSEnrichment.cleanGeneLists en Python

Ejemplo n.º 1

Archivo: pipeline_enrichment.py Proyecto: CGATOxford/CGATPipelines

def cleanUserBackgrounds(infile, outfile):
    '''
    Removes duplicates from user specified backgrounds and converts IDs to
    ensemblg.
    '''
    idtype = PARAMS['id_type']
    dbname = PARAMS['db_name']
    PipelineEnrichment.cleanGeneLists(infile, outfile, idtype, dbname,
                                      submit=True)

Ejemplo n.º 2

Archivo: pipeline_enrichment.py Proyecto: dormeight/CGATPipelines

def cleanUserBackgrounds(infile, outfile):
    '''
    Removes duplicates from user specified backgrounds and converts IDs to
    ensemblg.
    '''
    idtype = PARAMS['id_type']
    dbname = PARAMS['db_name']
    PipelineEnrichment.cleanGeneLists(infile, outfile, idtype, dbname,
                                      submit=True)

Ejemplo n.º 3

Archivo: pipeline_enrichment.py Proyecto: CGATOxford/CGATPipelines

def cleanForegrounds(infile, outfile):
    '''
    Removes duplicates from the foreground and converts IDs to ensemblg.
    '''
    idtype = PARAMS['id_type']
    dbname = PARAMS['db_name']
    E.info(idtype)
    PipelineEnrichment.cleanGeneLists(infile, outfile, idtype, dbname,
                                      submit=True)

Ejemplo n.º 4

Archivo: pipeline_enrichment.py Proyecto: dormeight/CGATPipelines

def cleanForegrounds(infile, outfile):
    '''
    Removes duplicates from the foreground and converts IDs to ensemblg.
    '''
    idtype = PARAMS['id_type']
    dbname = PARAMS['db_name']
    E.info(idtype)
    PipelineEnrichment.cleanGeneLists(infile, outfile, idtype, dbname,
                                      submit=True)