def cleanUserBackgrounds(infile, outfile):
'''
Removes duplicates from user specified backgrounds and converts IDs to
ensemblg.
'''
idtype = PARAMS['id_type']
dbname = PARAMS['db_name']
PipelineEnrichment.cleanGeneLists(infile, outfile, idtype, dbname,
submit=True)
def cleanUserBackgrounds(infile, outfile):
'''
Removes duplicates from user specified backgrounds and converts IDs to
ensemblg.
'''
idtype = PARAMS['id_type']
dbname = PARAMS['db_name']
PipelineEnrichment.cleanGeneLists(infile, outfile, idtype, dbname,
submit=True)
def cleanForegrounds(infile, outfile):
'''
Removes duplicates from the foreground and converts IDs to ensemblg.
'''
idtype = PARAMS['id_type']
dbname = PARAMS['db_name']
E.info(idtype)
PipelineEnrichment.cleanGeneLists(infile, outfile, idtype, dbname,
submit=True)
def cleanForegrounds(infile, outfile):
'''
Removes duplicates from the foreground and converts IDs to ensemblg.
'''
idtype = PARAMS['id_type']
dbname = PARAMS['db_name']
E.info(idtype)
PipelineEnrichment.cleanGeneLists(infile, outfile, idtype, dbname,
submit=True)