def test_loadParameterSetFromDir2(self):
"""
Try loading from specified bundle
X/
2013-03/ <------------ here
GenomicConsensus/
QuiverParameters.ini
"""
quiverParamsIni = m._findParametersFile()
X = up(up(quiverParamsIni))
paramSets = m._loadParameterSets(m._findParametersFile(X))
assert "C2.AllQVsModel" in paramSets
def test_loadParameterSetFromDir1(self):
"""
Try loading from X, where the FS looks like:
X/
2013-03/
GenomicConsensus/
QuiverParameters.ini
"""
quiverParamsIni = m._findParametersFile()
X = up(up(up(quiverParamsIni)))
paramSets = m._loadParameterSets(m._findParametersFile(X))
assert "C2.AllQVsModel" in paramSets
def test_loadParameterSetFromDir2(self):
"""
Try loading from specified bundle
X/
2013-03/ <------------ here
GenomicConsensus/
QuiverParameters.ini
"""
quiverParamsIni = m._findParametersFile()
X = up(up(quiverParamsIni))
paramSets = m._loadParameterSets(m._findParametersFile(X))
assert "C2.AllQVsModel" in paramSets
def test_loadParameterSetFromDir1(self):
"""
Try loading from X, where the FS looks like:
X/
2013-03/
GenomicConsensus/
QuiverParameters.ini
"""
quiverParamsIni = m._findParametersFile()
X = up(up(up(quiverParamsIni)))
paramSets = m._loadParameterSets(m._findParametersFile(X))
assert "C2.AllQVsModel" in paramSets
def test_loadBundledParameterSet(self):
"""
Make sure that the bundled parameter set in resources/ works.
"""
paramSets = m._loadParameterSets(m._findParametersFile())
assert "C2.AllQVsModel" in paramSets
def test_loadBundledParameterSet(self):
"""
Make sure that the bundled parameter set in resources/ works.
"""
paramSets = m._loadParameterSets(m._findParametersFile())
assert "C2.AllQVsModel" in paramSets