Ejemplo n.º 1
0
 def test_loadParameterSetFromDir2(self):
     """
     Try loading from specified bundle
       X/
         2013-03/  <------------ here
           GenomicConsensus/
             QuiverParameters.ini
     """
     quiverParamsIni = m._findParametersFile()
     X = up(up(quiverParamsIni))
     paramSets = m._loadParameterSets(m._findParametersFile(X))
     assert "C2.AllQVsModel" in paramSets
Ejemplo n.º 2
0
 def test_loadParameterSetFromDir1(self):
     """
     Try loading from X, where the FS looks like:
       X/
         2013-03/
           GenomicConsensus/
             QuiverParameters.ini
     """
     quiverParamsIni = m._findParametersFile()
     X = up(up(up(quiverParamsIni)))
     paramSets = m._loadParameterSets(m._findParametersFile(X))
     assert "C2.AllQVsModel" in paramSets
 def test_loadParameterSetFromDir2(self):
     """
     Try loading from specified bundle
       X/
         2013-03/  <------------ here
           GenomicConsensus/
             QuiverParameters.ini
     """
     quiverParamsIni = m._findParametersFile()
     X = up(up(quiverParamsIni))
     paramSets = m._loadParameterSets(m._findParametersFile(X))
     assert "C2.AllQVsModel" in paramSets
 def test_loadParameterSetFromDir1(self):
     """
     Try loading from X, where the FS looks like:
       X/
         2013-03/
           GenomicConsensus/
             QuiverParameters.ini
     """
     quiverParamsIni = m._findParametersFile()
     X = up(up(up(quiverParamsIni)))
     paramSets = m._loadParameterSets(m._findParametersFile(X))
     assert "C2.AllQVsModel" in paramSets
Ejemplo n.º 5
0
 def test_loadBundledParameterSet(self):
     """
     Make sure that the bundled parameter set in resources/ works.
     """
     paramSets = m._loadParameterSets(m._findParametersFile())
     assert "C2.AllQVsModel" in paramSets
 def test_loadBundledParameterSet(self):
     """
     Make sure that the bundled parameter set in resources/ works.
     """
     paramSets = m._loadParameterSets(m._findParametersFile())
     assert "C2.AllQVsModel" in paramSets