def test_loadParameterSetFromDir2(self): """ Try loading from specified bundle X/ 2013-03/ <------------ here GenomicConsensus/ QuiverParameters.ini """ quiverParamsIni = m._findParametersFile() X = up(up(quiverParamsIni)) paramSets = m._loadParameterSets(m._findParametersFile(X)) assert "C2.AllQVsModel" in paramSets
def test_loadParameterSetFromDir1(self): """ Try loading from X, where the FS looks like: X/ 2013-03/ GenomicConsensus/ QuiverParameters.ini """ quiverParamsIni = m._findParametersFile() X = up(up(up(quiverParamsIni))) paramSets = m._loadParameterSets(m._findParametersFile(X)) assert "C2.AllQVsModel" in paramSets
def test_loadBundledParameterSet(self): """ Make sure that the bundled parameter set in resources/ works. """ paramSets = m._loadParameterSets(m._findParametersFile()) assert "C2.AllQVsModel" in paramSets