Ejemplo n.º 1
0
import sys
import os

sys.path.append('../..')

from OpenElectrophy.core.tools import *
from OpenElectrophy.spikesorting import SpikeSorter, generate_block_for_sorting
from OpenElectrophy.core import OEBase, open_db

import quantities as pq

url = 'sqlite:///'
dbinfo = open_db(url=url, use_global_session=True)
#~ session = dbinfo.Session()


def test1():
    bl1 = generate_block_for_sorting(
        nb_unit=2,
        duration=3. * pq.s,
        nb_segment=2,
    )
    oebl1 = OEBase.from_neo(bl1, dbinfo.mapped_classes, cascade=True)
    oebl1.save()

    bl2 = generate_block_for_sorting(
        nb_unit=3,
        duration=2.5 * pq.s,
        nb_segment=1,
    )
    oebl2 = OEBase.from_neo(bl2, dbinfo.mapped_classes, cascade=True)
Ejemplo n.º 2
0
import sys
import os

sys.path.append('../..')

from OpenElectrophy.core.tools import *
from OpenElectrophy.spikesorting import SpikeSorter, generate_block_for_sorting
from OpenElectrophy.core import OEBase, open_db

import quantities as pq


url = 'sqlite:///'
dbinfo = open_db(url = url, use_global_session = True)
#~ session = dbinfo.Session()


def test1():
    bl1 = generate_block_for_sorting(nb_unit = 2,
                                                        duration = 3.*pq.s,
                                                        nb_segment = 2,
                                                        )
    oebl1 = OEBase.from_neo(bl1, dbinfo.mapped_classes, cascade =True)
    oebl1.save()

    bl2 = generate_block_for_sorting(nb_unit = 3,
                                                        duration = 2.5*pq.s,
                                                        nb_segment = 1,
                                                        )    
    oebl2 = OEBase.from_neo(bl2, dbinfo.mapped_classes, cascade =True)
    oebl2.save()
Ejemplo n.º 3
0
from OpenElectrophy.gui.guiutil.picklesettings import PickleSettings
from OpenElectrophy.spikesorting import SpikeSorter, generate_block_for_sorting
from OpenElectrophy.core import OEBase, open_db
#~ from OpenElectrophy.core.base import OEBase
import os

import quantities as pq
import numpy as np

#~ if os.path.exists('test_spikesorting.sqlite'):
    #~ os.remove('test_spikesorting.sqlite')



url = 'sqlite:///test_spikesorting.sqlite'
dbinfo = open_db(url = url, use_global_session = True, myglobals = globals(),)
session = dbinfo.Session()
oebl = session.query(Block).first()
if oebl is None:
    print 'do not exists: so create'
    bl = generate_block_for_sorting(nb_unit = 6,
                                                        duration = 30.*pq.s,
                                                        noise_ratio = 0.2,
                                                        nb_segment = 2,
                                                        )
    #~ for s, seg in enumerate(bl.segments):
        #~ for k, sptr in enumerate(seg.spiketrains):
            #~ print 's', s, 'k', k, sptr.size
    print bl.recordingchannelgroups
    oebl = OEBase.from_neo(bl, dbinfo.mapped_classes, cascade =True)
    print oebl.recordingchannelgroups
from OpenElectrophy.gui.guiutil.picklesettings import PickleSettings
from OpenElectrophy.spikesorting import SpikeSorter, generate_block_for_sorting
from OpenElectrophy.core import OEBase, open_db
#~ from OpenElectrophy.core.base import OEBase
import os

import quantities as pq
import numpy as np

#~ if os.path.exists('test_spikesorting.sqlite'):
#~ os.remove('test_spikesorting.sqlite')

url = 'sqlite:///test_spikesorting.sqlite'
dbinfo = open_db(
    url=url,
    use_global_session=True,
    myglobals=globals(),
)
session = dbinfo.Session()
oebl = session.query(Block).first()
if oebl is None:
    print 'do not exists: so create'
    bl = generate_block_for_sorting(
        nb_unit=6,
        duration=30. * pq.s,
        noise_ratio=0.2,
        nb_segment=2,
    )
    #~ for s, seg in enumerate(bl.segments):
    #~ for k, sptr in enumerate(seg.spiketrains):
    #~ print 's', s, 'k', k, sptr.size