import sys
import os
sys.path.append('../..')
from OpenElectrophy.core.tools import *
from OpenElectrophy.spikesorting import SpikeSorter, generate_block_for_sorting
from OpenElectrophy.core import OEBase, open_db
import quantities as pq
url = 'sqlite:///'
dbinfo = open_db(url=url, use_global_session=True)
#~ session = dbinfo.Session()
def test1():
bl1 = generate_block_for_sorting(
nb_unit=2,
duration=3. * pq.s,
nb_segment=2,
)
oebl1 = OEBase.from_neo(bl1, dbinfo.mapped_classes, cascade=True)
oebl1.save()
bl2 = generate_block_for_sorting(
nb_unit=3,
duration=2.5 * pq.s,
nb_segment=1,
)
oebl2 = OEBase.from_neo(bl2, dbinfo.mapped_classes, cascade=True)
import sys
import os
sys.path.append('../..')
from OpenElectrophy.core.tools import *
from OpenElectrophy.spikesorting import SpikeSorter, generate_block_for_sorting
from OpenElectrophy.core import OEBase, open_db
import quantities as pq
url = 'sqlite:///'
dbinfo = open_db(url = url, use_global_session = True)
#~ session = dbinfo.Session()
def test1():
bl1 = generate_block_for_sorting(nb_unit = 2,
duration = 3.*pq.s,
nb_segment = 2,
)
oebl1 = OEBase.from_neo(bl1, dbinfo.mapped_classes, cascade =True)
oebl1.save()
bl2 = generate_block_for_sorting(nb_unit = 3,
duration = 2.5*pq.s,
nb_segment = 1,
)
oebl2 = OEBase.from_neo(bl2, dbinfo.mapped_classes, cascade =True)
oebl2.save()
from OpenElectrophy.gui.guiutil.picklesettings import PickleSettings
from OpenElectrophy.spikesorting import SpikeSorter, generate_block_for_sorting
from OpenElectrophy.core import OEBase, open_db
#~ from OpenElectrophy.core.base import OEBase
import os
import quantities as pq
import numpy as np
#~ if os.path.exists('test_spikesorting.sqlite'):
#~ os.remove('test_spikesorting.sqlite')
url = 'sqlite:///test_spikesorting.sqlite'
dbinfo = open_db(url = url, use_global_session = True, myglobals = globals(),)
session = dbinfo.Session()
oebl = session.query(Block).first()
if oebl is None:
print 'do not exists: so create'
bl = generate_block_for_sorting(nb_unit = 6,
duration = 30.*pq.s,
noise_ratio = 0.2,
nb_segment = 2,
)
#~ for s, seg in enumerate(bl.segments):
#~ for k, sptr in enumerate(seg.spiketrains):
#~ print 's', s, 'k', k, sptr.size
print bl.recordingchannelgroups
oebl = OEBase.from_neo(bl, dbinfo.mapped_classes, cascade =True)
print oebl.recordingchannelgroups
from OpenElectrophy.gui.guiutil.picklesettings import PickleSettings
from OpenElectrophy.spikesorting import SpikeSorter, generate_block_for_sorting
from OpenElectrophy.core import OEBase, open_db
#~ from OpenElectrophy.core.base import OEBase
import os
import quantities as pq
import numpy as np
#~ if os.path.exists('test_spikesorting.sqlite'):
#~ os.remove('test_spikesorting.sqlite')
url = 'sqlite:///test_spikesorting.sqlite'
dbinfo = open_db(
url=url,
use_global_session=True,
myglobals=globals(),
)
session = dbinfo.Session()
oebl = session.query(Block).first()
if oebl is None:
print 'do not exists: so create'
bl = generate_block_for_sorting(
nb_unit=6,
duration=30. * pq.s,
noise_ratio=0.2,
nb_segment=2,
)
#~ for s, seg in enumerate(bl.segments):
#~ for k, sptr in enumerate(seg.spiketrains):
#~ print 's', s, 'k', k, sptr.size