def __init__(self,**kwargs):
align_filter.__init__(self,**kwargs)
self.name='ribosomal_mit'
self.description='remove rRNA/MT matches'
self.ewbt='human.GRCh37.61.rRNA-MT'
self.blat_index='human.GRCh37.61.rRNA-MT.2bit'
def __init__(self, **kwargs):
align_filter.__init__(self,**kwargs)
self.name='filterVectors'
self.description='filter vectors'
self.ewbt='UniVec_Core'
self.blat_index='solexa_primers.2bit'
def __init__(self,**kwargs):
align_filter.__init__(self,**kwargs)
self.name='repeats_consensus'
self.description='remove repeats'
self.ewbt='human_RepBase15.10'
self.blat_index='human_RepBase15.10.2bit'
def __init__(self,**kwargs):
align_filter.__init__(self,**kwargs)
self.name='remove_erccs'
self.description='remove ercc reads'
self.ewbt='ERCC_reference_081215'
self.blat_index='ERCC_reference_081215.2bit'
