def __init__(self,**kwargs): align_filter.__init__(self,**kwargs) self.name='ribosomal_mit' self.description='remove rRNA/MT matches' self.ewbt='human.GRCh37.61.rRNA-MT' self.blat_index='human.GRCh37.61.rRNA-MT.2bit'
def __init__(self, **kwargs): align_filter.__init__(self,**kwargs) self.name='filterVectors' self.description='filter vectors' self.ewbt='UniVec_Core' self.blat_index='solexa_primers.2bit'
def __init__(self,**kwargs): align_filter.__init__(self,**kwargs) self.name='repeats_consensus' self.description='remove repeats' self.ewbt='human_RepBase15.10' self.blat_index='human_RepBase15.10.2bit'
def __init__(self,**kwargs): align_filter.__init__(self,**kwargs) self.name='remove_erccs' self.description='remove ercc reads' self.ewbt='ERCC_reference_081215' self.blat_index='ERCC_reference_081215.2bit'